CB304682

Overview
NameCB304682
Unique NameCB304682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:85..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_APIME (Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 65/104 (62.50%), Postives = 84/104 (80.77%), Query Frame = -1
Query:  266 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 577
            P G+ + G+KIF  KCAQCHT+E G  HK GPNL G++GR++G  PGYSY+ ANK   + W ++TL++YL NPKKYIPGTKMVF GLKKPQ+RADLIAY++Q++
Sbjct:    4 PAGDPEKGKKIFVQKCAQCHTIESGGKHKVGPNLYGVYGRKTGQAPGYSYTDANKGKGITWNKETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAYIEQAS 107          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = -1
Query:  263 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 571
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLKQ+T+
Sbjct:    2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_SAMCY (Cytochrome c OS=Samia cynthia PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = -1
Query:  266 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 577
            P GNA+ G+KIF  +CAQCHTVE G  HK GPNL+G +GR++G  PG+SYS ANK   + W + TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK+ST
Sbjct:    4 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEST 107          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_CANFA (Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKKAT 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_MINSC (Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEATLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYLKKAT 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_EQUBU (Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_EQUAS (Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.678e-36
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = -1
Query:  266 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 571
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_ALLMI (Cytochrome c OS=Alligator mississippiensis PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = -1
Query:  263 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 571
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GL GR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLIGRKTGQAPGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKPERADLIAYLKEATS 104          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_MANSE (Cytochrome c OS=Manduca sexta PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 67/104 (64.42%), Postives = 81/104 (77.88%), Query Frame = -1
Query:  266 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 577
            P G+ + G+K+F  +CAQCHTVE G  HK GPNL+G FGR++G  PG+SYS ANK   + W E TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLKQ+T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKIGPNLHGFFGRKTGQAPGFSYSDANKAKGITWNEDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 107          
BLAST of CB304682 vs. ExPASy Swiss-Prot
Match: CYC_SARPE (Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.156e-35
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = -1
Query:  266 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 577
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
The following BLAST results are available for this feature:
BLAST of CB304682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_APIME5.674e-3662.50Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2[more]
CYC2_MOUSE5.674e-3666.99Cytochrome c, testis-specific OS=Mus musculus GN=C... [more]
CYC_SAMCY7.410e-3665.38Cytochrome c OS=Samia cynthia PE=1 SV=2[more]
CYC_CANFA7.410e-3665.69Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2[more]
CYC_MINSC9.678e-3665.69Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE... [more]
CYC_EQUBU9.678e-3664.71Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2[more]
CYC_EQUAS9.678e-3664.71Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2[more]
CYC_ALLMI1.264e-3564.08Cytochrome c OS=Alligator mississippiensis PE=1 SV... [more]
CYC_MANSE1.651e-3564.42Cytochrome c OS=Manduca sexta PE=1 SV=2[more]
CYC_SARPE2.156e-3562.50Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304682 ID=CB304682; Name=CB304682; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCACCCAAAATTCATGA
AATATGATTATAACCAGGAAATTCAATTGAATATTATGTTTGCCAATGAC
AGCAACCTTTTCTCAAATTAGCAATGCTCAAGTTACAAAGAACATTGCTG
AACCTTAAATGTTTAAAATTTATTGGTAAAAAACAGTACTATATCCGCAC
CGCAAAACAATCTTCAACAACTGCAAAATGGAATAGGTAAACTGACTATC
GGCAAGTTCTTATGCAGTAGATTGTTTCAAATATGCAATAAGGTCGGCAC
GATCCTGAGGCTTCTTCAATCCAGGGAATACCATCTTTGTTCCAGGAATG
TACTTCTTAGGGTTGAGCAAGTAATCATACAAAGTCTTTTCCTCCCAATT
CACAGCCATGTTCTTGTTAGCCGCAGAGTATGAGTACCCAGGTGTAGTCC
CCGATTGCCTTCCAAACAATCCGTTCAAATTAGGACCTTGTTTGTGACCG
GCGCCTTTCTCGACGGTGTGGCACTGAGCGCACTTGGTCTTGAAGATCTT
CTCTCCGGCCTTTGCATTGCCGGGAGGTGCCTCATCAAACGACGCCATTA
T
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