CB304684

Overview
NameCB304684
Unique NameCB304684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304684_ssr187 microsatellite CB304684_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = -3
Query:  254 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 529
            AITCGQV +++ PC+ + R GG  P   CCSGVRSL  AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  251 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 532
            +AITCGQV + L  C+ + R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK       G+   + AG+P +CGV IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.278e-23
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  254 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 529
            AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC++V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.975e-23
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  254 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 526
            ITCG V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPST+C+ V
Sbjct:   28 ITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  254 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 529
            AI+CGQV++++ PC+ + R  G  P   C SGVRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  254 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 532
            +AI+CGQVT+ L PC  +L  GG  PP  CC+GVR LN AA+TTPDRQ AC CLK        I  N A  LP +CG+ I YKI+P+ DCS++
Sbjct:   24 DAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = -3
Query:  251 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSTDCSRVR 529
            A++CGQV  +L PCI ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = -3
Query:  251 PVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 541
            P+T+  A++CG V ++LA CI ++  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.297e-22
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = -3
Query:  254 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 541
            P+  AITCG V + LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV +PY ISP+T+C+ +
Sbjct:   22 PLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CB304684 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.329e-22
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  254 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 526
            ++CG V   LAPCI +LR+ G  P   CC+GV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CB304684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_ORYSI5.995e-2457.61Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
SCA_LILLO1.023e-2353.19Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP3_HORVU2.278e-2352.17Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_SPIOL2.975e-2357.14Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_ELECO5.075e-2354.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP_GERHY6.629e-2353.76Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_PRUDU1.131e-2254.74Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ARATH1.929e-2252.94Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_BETVU4.297e-2251.04Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP5_VITSX7.329e-2252.75Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304684 ID=CB304684; Name=CB304684; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCG
GTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAAG
GAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGA
TTCTTCAGGGAGGCTTTTGCTTGGGTATAGCTAGTTATCAGGTTCTGNTN
ACAAGCTTGAGTCCCC
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