CB304687

Overview
NameCB304687
Unique NameCB304687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3817 contig Csv1_Contig3817:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: CRU3_BRANA (Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.926e-27
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = -3
Query:  259 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV 567
            I+Y T+G  R+Q+V +NG+NV D Q+++GQL+V+PQGFA V ++     EWISFKTN  AM S LAGR S LR LPL+VI N+FQ+S +EA+R+K+N  E T+
Sbjct:  390 ILYCTQGQARIQVVNDNGQNVLDQQVQKGQLVVIPQGFAYVVQSHQNNFEWISFKTNANAMVSTLAGRTSALRALPLEVITNAFQISLEEARRIKFNTLETTL 492          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: CRU2_BRANA (Cruciferin BnC2 OS=Brassica napus GN=BnC2 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.291e-27
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = -3
Query:  238 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV-FTPGPRS 567
            ++YVT G  ++Q+V +NG+ VFDGQ+ +GQL+ +PQGF+VVKRA +    WI FKTN  A  + LAGR SV+RGLPL+VI N +Q+S +EA+R+K+N  E T+  + GP S
Sbjct:  377 VLYVTDGEAQIQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSDQFRWIEFKTNANAQINTLAGRTSVMRGLPLEVIANGYQISLEEARRVKFNTIETTLTHSSGPAS 487          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLUA1_ORYSJ (Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.604e-27
Identity = 54/107 (50.47%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  250 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNR-QELTVFTP 567
            +VY+T+G  R+Q+V  NG+ VF+G++R GQL+++PQ +AVVK+A   G  +I+FKTN  +M S +AG++S+ R LP DV+ N++++SR+EAQRLK+NR  E   FTP
Sbjct:  377 VVYITQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPNDVLANAYRISREEAQRLKHNRGDEFGAFTP 483          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLUA2_ORYSJ (Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.631e-26
Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = -3
Query:  250 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNR-QELTVFTP 567
            IVY+T+G  ++Q+V  NG+ VF+G++R GQL++VPQ + VVK+A   G  +I+FKTN  +M S +AG++S+ R LP DV+ N++++SR+EAQRLK+NR  E   FTP
Sbjct:  377 IVYITQGRAQVQVVNNNGKTVFNGELRRGQLLIVPQHYVVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPTDVLANAYRISREEAQRLKHNRGDEFGAFTP 483          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 12S2_ARATH (12S seed storage protein CRB OS=Arabidopsis thaliana GN=CRB PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.633e-26
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  238 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRS 564
            +YVT G   +Q+V +NGE VFD +I  GQL+VVPQGF+V+K A     EWI FKTN+ A  + LAGR SV+RGLPL+VI N +Q+S +EA+R+K++  E T+    P S
Sbjct:  341 LYVTNGKAHIQMVNDNGERVFDQEISSGQLLVVPQGFSVMKHAIGEQFEWIEFKTNENAQVNTLAGRTSVMRGLPLEVITNGYQISPEEAKRVKFSTIETTLTHSSPMS 449          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLUA3_ORYSJ (Glutelin type-A 3 OS=Oryza sativa subsp. japonica GN=GLUA3 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.744e-26
Identity = 53/107 (49.53%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  250 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNR-QELTVFTP 567
            +VY+T+G  R+Q+V  NG+ VFDG++R GQL+++PQ   V+K+A   G  +I+ KTN  +M S +AG+ S+ R LP DV+ N++++SR+EA+RLK+NR  EL VFTP
Sbjct:  376 VVYITQGRARVQVVNNNGKTVFDGELRRGQLLIIPQHHVVIKKAQREGCSYIALKTNPDSMVSHMAGKNSIFRALPDDVVANAYRISREEARRLKHNRGDELGVFTP 482          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 11S3_HELAN (11S globulin seed storage protein G3 OS=Helianthus annuus GN=HAG3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.744e-26
Identity = 54/106 (50.94%), Postives = 77/106 (72.64%), Query Frame = -3
Query:  250 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTP 567
            ++YVT G  R+QIV   G +VFD ++REGQ++V+PQ FAV+KRA  +G  W+SFKTND AM + LAGR S     PL +  N +Q+SR+EAQ+LK++++E  +F P
Sbjct:  376 LLYVTEGALRVQIVDNQGNSVFDNELREGQVVVIPQNFAVIKRANEQGSRWVSFKTNDNAMIANLAGRVSASAASPLTLWANRYQLSREEAQQLKFSQRETVLFAP 481          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: CRU4_BRANA (Cruciferin CRU4 OS=Brassica napus GN=CRU4 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.057e-25
Identity = 55/102 (53.92%), Postives = 77/102 (75.49%), Query Frame = -3
Query:  259 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV 564
            +YVT+G   +Q V +NG+ VFD +I +GQL+VVPQGFAVVKRA ++  +WI FK+ND A  + LAGR SV+RGLPL+VI N +Q+S  EA+ +K++  E T+
Sbjct:  348 LYVTKGKAHIQNVNDNGQRVFDQEISKGQLLVVPQGFAVVKRATSQQFQWIEFKSNDNAQINTLAGRTSVMRGLPLEVISNGYQISPQEARSVKFSTLETTL 449          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGA_GOSHI (Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  250 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTP 567
            I+Y+ RG  R+Q+V  NG+ VFD  + +GQL+ VPQ FA +K+AGN G EWISF TN  A  + +AG  S +R LP +V+  S+QVSR++A+R+K+N +    FTP
Sbjct:  395 ILYMLRGCARVQVVNHNGDAVFDDNVEQGQLLTVPQNFAFMKQAGNEGAEWISFFTNSEATNTPMAGSVSFMRALPEEVVAASYQVSREDARRIKFNNKNTFFFTP 500          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLUB5_ORYSJ (Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.400e-24
Identity = 51/112 (45.54%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNR-QELTVFTPGPRSQ 567
            +VY+ +G+ R+Q+V+  G+ VF+G +R GQL+++PQ + V+K+A + G ++ISFKTN  +M S LAG+ S+ R +P+DVI N++++SR++A+ LK NR +EL  FTP  + Q
Sbjct:  374 LVYIVQGHARVQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKTNANSMVSHLAGKNSIFRAMPVDVIANAYRISREQARSLKNNRGEELGAFTPRYQQQ 485          
The following BLAST results are available for this feature:
BLAST of CB304687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CRU3_BRANA1.926e-2755.34Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=... [more]
CRU2_BRANA4.291e-2752.25Cruciferin BnC2 OS=Brassica napus GN=BnC2 PE=3 SV=... [more]
GLUA1_ORYSJ5.604e-2750.47Glutelin type-A 1 OS=Oryza sativa subsp. japonica ... [more]
GLUA2_ORYSJ1.631e-2650.47Glutelin type-A 2 OS=Oryza sativa subsp. japonica ... [more]
12S2_ARATH3.633e-2652.2912S seed storage protein CRB OS=Arabidopsis thalia... [more]
GLUA3_ORYSJ4.744e-2649.53Glutelin type-A 3 OS=Oryza sativa subsp. japonica ... [more]
11S3_HELAN4.744e-2650.9411S globulin seed storage protein G3 OS=Helianthus... [more]
CRU4_BRANA1.057e-2553.92Cruciferin CRU4 OS=Brassica napus GN=CRU4 PE=1 SV=... [more]
LEGA_GOSHI8.947e-2549.06Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2[more]
GLUB5_ORYSJ3.400e-2445.54Glutelin type-B 5 OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304687 ID=CB304687; Name=CB304687; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTCTTGAATGATATCCACTCCAGTCCACGGTTACCTGCCCTCTTCACCAC
GGCGAAGCCCTGCGGAACAACGATCAGCTGACCCTCCCGGATTTGACCGT
CGAACACATTCTCCCCGTTCTCCGCTACAATTTGCATCCTGCCGTTGCCC
CTTGTTACGTAGACTATGC
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