CB304687

Overview
NameCB304687
Unique NameCB304687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLYG4_SOYBN (Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = -3
Query:  280 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKY 567
            ++YVTRG G++++V   G  VFDG++R GQL+VVPQ F V ++AG +G E+I FKT+  A+TS L     V R +P +V+ +S+ + + +   LKY
Sbjct:  448 VIYVTRGQGKVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQAGEQGFEYIVFKTHHNAVTSYL---KDVFRAIPSEVLAHSYNLRQSQVSELKY 540          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLYG2_SOYBN (Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            I+Y   G   +Q+V  NGE VFDG+++EG +++VPQ FAV  ++ +   E++SFKTND      LAG  S+L  LP +VIQ++F +   +A+++K N    +   P   SQ
Sbjct:  371 IIYALNGRALVQVVNCNGERVFDGELQEGGVLIVPQNFAVAAKSQSDNFEYVSFKTNDRPSIGNLAGANSLLNALPEEVIQHTFNLKSQQARQVK-NNNPFSFLVPPQESQ 480          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: AHY3_ARAHY (Arachin Ahy-3 OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = -3
Query:  217 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQWGLTVA 567
            ++Y   G   +Q+V  NG  VFD +++EGQ +VVPQ FAV  ++ +    +++FKTN  A  S LAG+ S +  LP DV+ NS+ +  ++A++LK N    T   P   SQ   TVA
Sbjct:  369 MIYALHGGAHVQVVDCNGNRVFDEELQEGQSLVVPQNFAVAAKSQSEHFLYVAFKTNSRASISNLAGKNSYMWNLPEDVVANSYGLQYEQARQLK-NNNPFTFLVPPQDSQMIRTVA 484          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGK_PEA (Legumin K (Fragment) OS=Pisum sativum GN=LEGK PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 46/112 (41.07%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAG-NRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++YV RG GR++IV   G+ VFD ++R+GQL+VVPQ F V ++AG   GLE++ FKTND A  S +     VLR  P +V+ N+F + + +   LK +     +  P  +SQ
Sbjct:  240 LLYVIRGEGRVRIVNFQGDAVFDNKVRKGQLVVVPQNFVVAEQAGEEEGLEYVVFKTNDRAAVSHV---QQVLRATPAEVLANAFGLRQRQVTELKLSGNRGPLVHPQSQSQ 348          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGB7_VICFA (Legumin type B (Fragment) OS=Vicia faba GN=LEB7 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAG-NRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++YV RG GR++IV   G  VFD ++R+GQL+VVPQ F V ++AG   GLE++ FKTND A  S +     V R  P DV+ N+F + + +   LK +     +  P  +SQ
Sbjct:  225 LLYVIRGEGRVRIVNSQGNAVFDNKVRKGQLVVVPQNFVVAEQAGEEEGLEYLVFKTNDRAAVSHV---QQVFRATPADVLANAFGLRQRQVTELKLSGNRGPLVHPHSQSQ 333          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGB6_VICFA (Legumin type B (Fragment) OS=Vicia faba GN=LEB6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAG-NRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++YV RG GR++IV   G  VFD ++R+GQL+VVPQ F V ++AG   GLE++ FKTND A  S +     V R  P DV+ N+F + + +   LK +     +  P  +SQ
Sbjct:  219 LLYVIRGEGRVRIVNSQGNAVFDNKVRKGQLVVVPQNFVVAEQAGEEEGLEYLVFKTNDRAAVSHV---QQVFRATPADVLANAFGLRQRQVTELKLSGNRGPLVHPQSQSQ 327          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGB2_VICFA (Legumin type B (Fragment) OS=Vicia faba GN=LEB2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAG-NRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++YV RG GR++IV   G  VFD ++R+GQL+VVPQ F V ++AG   GLE++ FKTND A  S +     V R  P DV+ N+F + + +   LK +     +  P  +SQ
Sbjct:  225 LLYVIRGEGRVRIVNSQGNAVFDNKVRKGQLVVVPQNFVVAEQAGEEEGLEYLVFKTNDRAAVSHV---QQVFRATPADVLANAFGLRQRQVTELKLSGNRGPLVHPQSQSQ 333          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: GLYG5_SOYBN (Glycinin OS=Glycine max PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = -3
Query:  280 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKY 564
            V +TRG GR+++V   G  VFDG++R GQL+VVPQ  AV ++ G +GLE++ FKT+  A++S +     V R +P +V+ NS+ + + + ++LKY
Sbjct:  415 VTMTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNPAVAEQGGEQGLEYVVFKTHHNAVSSYI---KDVFRVIPSEVLSNSYNLGQSQVRQLKY 506          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGJ_PEA (Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAG-NRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++YV RG GR++IV   G  VFD ++R+GQL+VVPQ F V ++AG   GLE++ FKTND A  S +     V R  P +V+ N+F + + +   LK +     +  P  +SQ
Sbjct:  393 LLYVIRGEGRVRIVNCQGNTVFDNKVRKGQLVVVPQNFVVAEQAGEEEGLEYVVFKTNDRAAVSHV---QQVFRATPSEVLANAFGLRQRQVTELKLSGNRGPLVHPRSQSQ 501          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGB4_VICFA (Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAG-NRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++YV RG GR++IV   G  VFD ++ +GQL+VVPQ F V ++AG   GLE++ FKTND A  S +     V R  P DV+ N+F + + +   LK +     +  P  +SQ
Sbjct:  374 LLYVIRGEGRVRIVNSQGNAVFDNKVTKGQLVVVPQNFVVAEQAGEEEGLEYLVFKTNDRAAVSHV---QQVFRATPADVLANAFGLRQRQVTELKLSGNRGPLVHPQSQSQ 482          
The following BLAST results are available for this feature:
BLAST of CB304687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GLYG4_SOYBN1.807e-1743.75Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1[more]
GLYG2_SOYBN1.807e-1739.64Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2[more]
AHY3_ARAHY1.998e-1639.32Arachin Ahy-3 OS=Arachis hypogaea PE=1 SV=1[more]
LEGK_PEA5.813e-1641.07Legumin K (Fragment) OS=Pisum sativum GN=LEGK PE=3... [more]
LEGB7_VICFA5.813e-1641.07Legumin type B (Fragment) OS=Vicia faba GN=LEB7 PE... [more]
LEGB6_VICFA5.813e-1641.07Legumin type B (Fragment) OS=Vicia faba GN=LEB6 PE... [more]
LEGB2_VICFA5.813e-1641.07Legumin type B (Fragment) OS=Vicia faba GN=LEB2 PE... [more]
GLYG5_SOYBN2.209e-1542.11Glycinin OS=Glycine max PE=1 SV=1[more]
LEGJ_PEA2.885e-1540.18Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1[more]
LEGB4_VICFA2.885e-1540.18Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304687 ID=CB304687; Name=CB304687; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTCTTGAATGATATCCACTCCAGTCCACGGTTACCTGCCCTCTTCACCAC
GGCGAAGCCCTGCGGAACAACGATCAGCTGACCCTCCCGGATTTGACCGT
CGAACACATTCTCCCCGTTCTCCGCTACAATTTGCATCCTGCCGTTGCCC
CTTGTTACGTAGACTATGC
back to top