CB304687

Overview
NameCB304687
Unique NameCB304687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3817 contig Csv1_Contig3817:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGB_PEA (Legumin B (Fragment) OS=Pisum sativum GN=LEGB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.190e-14
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = -3 
Query:  277 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGN-RGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYN 567
            ++YV RG GR++IV   G  VFD ++  GQL+VVPQ F V ++AGN  G E++ FKTND A  S +     V R  P +V+ N+F +   +  ++K N
Sbjct:  232 LLYVIRGEGRVRIVNSEGNKVFDDKVSLGQLVVVPQNFVVAQQAGNEEGFEYVVFKTNDRAAVSHV---NQVFRATPGEVLANAFGLRHSQVAQIKSN 326
The following BLAST results are available for this feature:
BLAST of CB304687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
LEGB_PEA3.190e-1441.84Legumin B (Fragment) OS=Pisum sativum GN=LEGB PE=2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304687 ID=CB304687; Name=CB304687; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTCTTGAATGATATCCACTCCAGTCCACGGTTACCTGCCCTCTTCACCAC
GGCGAAGCCCTGCGGAACAACGATCAGCTGACCCTCCCGGATTTGACCGT
CGAACACATTCTCCCCGTTCTCCGCTACAATTTGCATCCTGCCGTTGCCC
CTTGTTACGTAGACTATGC
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