CB304705

Overview
NameCB304705
Unique NameCB304705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = -3
Query:  215 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 472
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K +L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  212 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 466
            +K+I++DF A+WC PCK ++P+  ELA     +IF KVDVDE + +  ++ V+ MPTF+ TK G  +E + G  + EL+  V +H
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  218 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 457
            +V+DF A+WC PCK+M P L++L +  P V F+K DVDE   +A+E  V AMPTFVL K+G+++ +I+GA    L+  ++
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 125          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  215 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 472
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K +L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  215 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 472
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K +L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  215 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 472
            A  KL+VVDF+A+WC PCK++ P    L++K   V+F++VDVD+ K +A E  V+ MPTF   K+G+ +    GA K +L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  218 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 493
            + L+  I   KL+V DF A+WC PCK ++P L  +AK+   VIF+K+DVDE + VAE++ V AMPT ++ K G  +  +VGA +  ++  ++
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQ 104          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = -3
Query:  212 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 493
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K +L+ ++ ++
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  218 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 475
            +   KL+VVDF A+WC PCK ++P   + +       F+KVDVD+L  +A E  V AMP+F L K G+ +E IVGA   +L+ +++
Sbjct:   15 VCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 41/107 (38.32%), Postives = 68/107 (63.55%), Query Frame = -3
Query:  215 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 529
            QVIS   ++ +N+    G    K+I++DF A+WC PC+++SPI  + ++K  A  ++F KVDVD    ++EE  + AMPTF + K+G+ ++ +VGA    L+  V+K
Sbjct:    3 QVIS--NLDEFNKLTNSG----KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQK 103          
The following BLAST results are available for this feature:
BLAST of CB304705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_BOVIN1.606e-1543.02Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO1_CAEEL1.606e-1542.35Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TRX3_YEAST2.097e-1546.25Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_MACMU2.097e-1543.02Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA2.097e-1543.02Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT2.739e-1541.86Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_ECHGR2.739e-1541.30Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_MOUSE3.577e-1540.63Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
TRX1_SCHPO6.102e-1541.86Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_COPCM6.102e-1538.32Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304705 ID=CB304705; Name=CB304705; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGACGCCAAAGACGGTGTG
CTAGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACC
ATATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCA
ATGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCA
ACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCACCTTTCTTCGC
TCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCG
GCATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACA
TCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAA
AATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCA
CCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAG
GATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAAT
TATGATCA
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