CB304705

Overview
NameCB304705
Unique NameCB304705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = -3
Query:  221 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAV 493
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K +L+  +
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATI 101          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  230 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQ 496
            N QL K  A+ KL+V+DF A+WC PCK++SP L+EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   12 NGQLTK--ASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  218 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 472
            A +KL+VVDF+A+WC PCK++ P    L  K   V+F+++DVD+ + VA    V+ MPTF   K GK ++   GA K +L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  218 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 529
            +V+   + ESWN  + +       IV  FTA WC P   M+    ELA      +FL VDVDE+K VA +  V+AMPTF+  K+G  ++++VGA   E++  V+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  212 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 475
            I+  +L++VDF A WC PCK ++P   E +K    ++F+KVDVDE+  V E+  + +MPTF + K G  ++ ++GA    L+  +EK+
Sbjct:   15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 102          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = -3
Query:  218 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 508
            + S  E  +K + AK  +VVD  A+WC PCK ++P + + A+      F ++DVDEL  VA E  + AMPTF+L K+G+ +  +VGA  G L+  ++
Sbjct:   10 ITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIK 106          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = -3
Query:  221 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAV 463
            KL+VVDF A+WC PCK+++P++ + A++     F K+DVDE+  VA++  V +MPT +  K GK + R+VGA    ++ A+
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 100          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  215 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF-VLTKEGKVLERIVGAKKGELQLAVEK 472
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF    K+G+ +    GA K +L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATINE 104          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  215 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-----ERIVGAKKGELQLAVEK 496
            N++LQK +++   +VVDF A WCPPCK ++P+  +L+ K  +P V+ F KV+VD ++  A+++ + AMPTF+  KEGK +       I GA    L  A EK
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEK 109          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  230 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQ 514
            H     + QL K  A+ KL+V+DF A+WC PCK++SP L EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   14 HLQADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLE 107          
The following BLAST results are available for this feature:
BLAST of CB304705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_RAT7.969e-1541.94Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO2_DROYA7.969e-1546.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO_CHICK1.041e-1441.18Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
TRXL4_ARATH1.359e-1438.46Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_PLAF71.359e-1438.64Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_EMENI1.359e-1439.18Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TRX2_YEAST1.775e-1441.98Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_PONAB3.028e-1443.68Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_FUSCU5.165e-1441.18Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO2_DROME5.165e-1443.75Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304705 ID=CB304705; Name=CB304705; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGACGCCAAAGACGGTGTG
CTAGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACC
ATATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCA
ATGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCA
ACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCACCTTTCTTCGC
TCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCG
GCATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACA
TCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAA
AATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCA
CCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAG
GATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAAT
TATGATCA
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