CB304705

Overview
NameCB304705
Unique NameCB304705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.077e-11
Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  212 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 511
            T  ++++ +Q G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   +EKH
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.077e-11
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = -3
Query:  212 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL-PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 511
            T +S++ +  +G+     ++ DF A WC PCK+++P+L EL +++   +  +K+DVDE +  A ++ V ++PT ++ K+G+V+E  VG K K  LQ  V KH
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.077e-11
Identity = 31/88 (35.23%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  212 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 475
            + AK L+VV F A W P C  M+ +++ELAK+   V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   27 LRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRH 114          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.407e-11
Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  212 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 511
            T  +++E +Q G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:    7 TDSNFDENIQSGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.407e-11
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = -3
Query:  233 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGEL 520
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  LA+K  +  + LK+DVD+ + + E + V +MPTFV  ++ + L    GA + +L
Sbjct:    3 SVRTMNDYHKRIEA--ADDKLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKL 97          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.407e-11
Identity = 27/86 (31.40%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  212 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 469
            A +LI++DF A+WC PC+++SPI  + + +     FLKV+ D  + + + + + AMPTF+  K  + ++ + GA +  +   + +H
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  221 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAV 472
            A ++L+ VDF+A+WC PC+ + P    L+ K   V+FL+VD D  + V  E A+  +PTF   K+ + ++ + GA K +L+  +
Sbjct:  466 AGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVI 549          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  245 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 475
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD     A  + V ++PT +L K+G+ ++RIVGAK
Sbjct:   22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  245 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 475
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD     A  + V ++PT +L K+G+ ++RIVGAK
Sbjct:   22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  245 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 511
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KV+ DE + ++ ++ + ++PT + TK+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
The following BLAST results are available for this feature:
BLAST of CB304705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_STAS11.077e-1136.27Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_BACSU1.077e-1136.27Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
GLRX3_BOVIN1.077e-1135.23Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
THIO_STAHJ1.407e-1136.27Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO1_DROME1.407e-1136.08Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]
NGLY1_CAEEL1.407e-1131.40Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXND2_HUMAN2.399e-1135.71Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
THIO_MYCTU2.399e-1139.74Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO2.399e-1139.74Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_HELPY2.399e-1134.44Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304705 ID=CB304705; Name=CB304705; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGACGCCAAAGACGGTGTG
CTAGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACC
ATATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCA
ATGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCA
ACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCACCTTTCTTCGC
TCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCG
GCATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACA
TCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAA
AATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCA
CCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAG
GATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAAT
TATGATCA
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