CB304705

Overview
NameCB304705
Unique NameCB304705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
[Close]
BLAST of CB304705 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3 
Query:  212 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 454
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103
The following BLAST results are available for this feature:
BLAST of CB304705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_STAAS9.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR9.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN9.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM9.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC9.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB9.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA89.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA39.118e-1139.76Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304705 ID=CB304705; Name=CB304705; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGACGCCAAAGACGGTGTG
CTAGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACC
ATATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCA
ATGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCA
ACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCACCTTTCTTCGC
TCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCG
GCATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACA
TCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAA
AATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCA
CCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAG
GATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAAT
TATGATCA
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