CB304712

Overview
NameCB304712
Unique NameCB304712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:36..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.836e-31
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV +H++Y C FCG+ AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_CHICK (60S ribosomal protein L37a OS=Gallus gallus GN=RPL37A PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KRKAVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_CAEEL (60S ribosomal protein L37a OS=Caenorhabditis elegans GN=rpl-43 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGASLRK  KK+EV++HS+Y C FCG+ A+KRKA GIW C  C KV AGGAY   T +A TVRSTIRRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIRRLRDLKE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_XENLA (60S ribosomal protein L37a OS=Xenopus laevis GN=rpl37a PE=3 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 8.249e-31
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTR+GASLRK +KK+E+S+H+KY C FCG+  +KRKAVGIW C  C K+ AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_RAT (60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.407e-30
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PONAB (60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.407e-30
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_MOUSE (60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.407e-30
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_HUMAN (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.407e-30
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_BOVIN (60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.407e-30
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_ICTPU (60S ribosomal protein L37a OS=Ictalurus punctatus GN=rpl37a PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.400e-30
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGASLRK +KK+E+S+H+KY C FCG+  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S I+RL+E  +
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKEMKD 91          
The following BLAST results are available for this feature:
BLAST of CB304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL43_ASHGO4.836e-3166.3060S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
RL37A_CHICK6.316e-3170.4560S ribosomal protein L37a OS=Gallus gallus GN=RPL... [more]
RL37A_CAEEL6.316e-3169.2360S ribosomal protein L37a OS=Caenorhabditis elega... [more]
RL37A_XENLA8.249e-3169.3260S ribosomal protein L37a OS=Xenopus laevis GN=rp... [more]
RL37A_RAT1.407e-3069.3260S ribosomal protein L37a OS=Rattus norvegicus GN... [more]
RL37A_PONAB1.407e-3069.3260S ribosomal protein L37a OS=Pongo abelii GN=RPL3... [more]
RL37A_MOUSE1.407e-3069.3260S ribosomal protein L37a OS=Mus musculus GN=Rpl3... [more]
RL37A_HUMAN1.407e-3069.3260S ribosomal protein L37a OS=Homo sapiens GN=RPL3... [more]
RL37A_BOVIN1.407e-3069.3260S ribosomal protein L37a OS=Bos taurus GN=RPL37A... [more]
RL37A_ICTPU2.400e-3065.9360S ribosomal protein L37a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304712 ID=CB304712; Name=CB304712; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGGAAAACCCACTAGAT
AACATAATTTCATAGGAAAAATAGCGAATGAACGTCTCAAGAGTCAAAAC
ACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTAGAAAT
AAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGATCAAA
CGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTTCAGTT
TGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTAGCAGT
GTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTTGCAGC
CCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTCCCCGCAAAATTCG
CAGAAATATTTGCTATGCCGACTAACCTCCATCTTCTTAATTTGCTTCCT
CAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGCCTTCT
TCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTCTTCAA
CAAGCAGCGGCTGT
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