CB304712

Overview
NameCB304712
Unique NameCB304712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:36..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METM5 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = -1
Query:  253 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 504
            TKK G  G++G+RYG  +R +++ +E+ +  +Y C  C    +KR    IW C+ CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRAGTSIWVCEKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METVS (50S ribosomal protein L37Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = -1
Query:  253 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 504
            TKK G  G++G RYG  +R +++ +E+ ++ +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGPRYGRKIRVRLRDVEIKQNKEYKCPVCAFPKLKRAGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_THESM (50S ribosomal protein L37Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = -1
Query:  310 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAY 507
            RTKK G  G++G RYG  +R+++  +E     K+ C  CG  AV+R + GIW C+ CG   AGGAY
Sbjct:    3 RTKKVGSAGRFGPRYGLKIRRRVAAVEEKMRQKHTCPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METM7 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = -1
Query:  253 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 504
            TKK G  G++G+RYG  +R +++ +E+ +  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METM6 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = -1
Query:  253 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 504
            TKK G  G++G+RYG  +R +++ +E+ +  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_AERPE (50S ribosomal protein L37Ae OS=Aeropyrum pernix GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = -1
Query:  307 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEY-AVKRKAVGIWGCKDCGKVKAGGAYT 507
            RTK  G  G+YG RYG S+RK+++ +   R+  + C FCG    V+R +VG+W C+ CG   AG AYT
Sbjct:    3 RTKVVGPAGRYGPRYGVSVRKRVRDILARRYQPHECPFCGSTGTVRRVSVGVWSCRKCGNTWAGAAYT 70          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_THEON (50S ribosomal protein L37Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = -1
Query:  310 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAY 507
            RT K G  G++G RYG  +R+++  +E     K+ C  CG  AV+R + GIW C+ CG   AGGAY
Sbjct:    3 RTTKVGSAGRFGPRYGLKIRRRVAAVEAKMKQKHICPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_THEGJ (50S ribosomal protein L37Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = -1
Query:  268 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 507
            RT K G  G++G RYG  +R+++  +E     K+ C  CG  AV+R + GIW C+ CG   AGGAY   T +    +  +
Sbjct:    3 RTVKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVV 82          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PYRKO (50S ribosomal protein L37Ae OS=Pyrococcus kodakaraensis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = -1
Query:  271 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNT-ASAVTVRST 507
            RT K G  G++G RYG  +R+++  +E     K+ C  CG  AV+R + GIW C+ CG   AGGAY   T A  V  R T
Sbjct:    3 RTTKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVT 82          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_THEAC (50S ribosomal protein L37Ae OS=Thermoplasma acidophilum GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = -1
Query:  307 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYT 516
            M+KRT K G+ G++G RYG ++RK+  ++   + + Y C  C +  VKR A GIW C+ CG   AGG+YT
Sbjct:    1 MSKRTVKVGVAGRFGPRYGVTIRKEWSEIYKQKIALYTCPSCKKKRVKRVANGIWQCRHCGYKFAGGSYT 70          
The following BLAST results are available for this feature:
BLAST of CB304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_METM51.013e-1239.2950S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METVS1.728e-1239.2950S ribosomal protein L37Ae OS=Methanococcus vanni... [more]
RL37A_THESM2.257e-1245.4550S ribosomal protein L37Ae OS=Thermococcus sibiri... [more]
RL37A_METM72.257e-1239.2950S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METM62.257e-1239.2950S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_AERPE3.850e-1245.5950S ribosomal protein L37Ae OS=Aeropyrum pernix GN... [more]
RL37A_THEON5.028e-1243.9450S ribosomal protein L37Ae OS=Thermococcus onnuri... [more]
RL37A_THEGJ5.028e-1237.5050S ribosomal protein L37Ae OS=Thermococcus gammat... [more]
RL37A_PYRKO5.028e-1242.5050S ribosomal protein L37Ae OS=Pyrococcus kodakara... [more]
RL37A_THEAC8.576e-1244.2950S ribosomal protein L37Ae OS=Thermoplasma acidop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304712 ID=CB304712; Name=CB304712; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGGAAAACCCACTAGAT
AACATAATTTCATAGGAAAAATAGCGAATGAACGTCTCAAGAGTCAAAAC
ACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTAGAAAT
AAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGATCAAA
CGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTTCAGTT
TGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTAGCAGT
GTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTTGCAGC
CCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTCCCCGCAAAATTCG
CAGAAATATTTGCTATGCCGACTAACCTCCATCTTCTTAATTTGCTTCCT
CAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGCCTTCT
TCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTCTTCAA
CAAGCAGCGGCTGT
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