CB304712

Overview
NameCB304712
Unique NameCB304712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:36..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_METST (50S ribosomal protein L37Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = -1
Query:  259 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 507
            +  K G  G++G RYG   ++ +K +E   H+K+ C  C    VKR   GIW C+ CG V  GGAY   T      +  I+R+
Sbjct:    3 KKSKVGSTGRFGARYGRKAKRTVKDIEDKMHAKHVCPKCDRPGVKRTHAGIWKCRKCGAVFTGGAYIPTTPMGKVAKRNIKRI 85          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_ARCFU (50S ribosomal protein L37Ae OS=Archaeoglobus fulgidus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = -1
Query:  268 RTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 507
            RTKK    G++G RYG  +R+   ++E  +  KY C+ CG+ AVKR   GIW C+ CG   AGG Y   T     V  ++
Sbjct:    3 RTKKVRSAGRFGPRYGLRVRRTWLEIEAVQRQKYVCKKCGKKAVKRSGTGIWECRHCGYKFAGGCYQPVTPGGKIVEKSV 82          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_THEVO (50S ribosomal protein L37Ae OS=Thermoplasma volcanium GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = -1
Query:  310 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAY 516
            M+KRT K G  G++G RYG ++RK+  ++   + + Y C  C +  VKR A GIW C+ CG   AGGAY
Sbjct:    1 MSKRTLKVGAAGRFGPRYGVTIRKEWNEIYKQKIALYTCPSCKKKRVKRLAAGIWVCRHCGYKFAGGAY 69          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_NANEQ (50S ribosomal protein L37Ae OS=Nanoarchaeum equitans GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = -1
Query:  310 TKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAY 504
            TKK G  G++G RYG  +RK++  +E+ +  K+ C FC   AV R+A GI+ CK CGK   G AY
Sbjct:    6 TKKVGPTGRFGPRYGLGIRKRVLTVEIKQRKKHVCPFCRSKAVIREAYGIYRCKKCGKQFTGLAY 70          
The following BLAST results are available for this feature:
BLAST of CB304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_METST1.120e-1136.1450S ribosomal protein L37Ae OS=Methanosphaera stad... [more]
RL37A_ARCFU1.463e-1140.0050S ribosomal protein L37Ae OS=Archaeoglobus fulgi... [more]
RL37A_THEVO2.495e-1144.9350S ribosomal protein L37Ae OS=Thermoplasma volcan... [more]
RL37A_NANEQ4.256e-1146.1550S ribosomal protein L37Ae OS=Nanoarchaeum equita... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304712 ID=CB304712; Name=CB304712; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGGAAAACCCACTAGAT
AACATAATTTCATAGGAAAAATAGCGAATGAACGTCTCAAGAGTCAAAAC
ACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTAGAAAT
AAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGATCAAA
CGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTTCAGTT
TGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTAGCAGT
GTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTTGCAGC
CCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTCCCCGCAAAATTCG
CAGAAATATTTGCTATGCCGACTAACCTCCATCTTCTTAATTTGCTTCCT
CAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGCCTTCT
TCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTCTTCAA
CAAGCAGCGGCTGT
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