CB304713

Overview
NameCB304713
Unique NameCB304713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT           KAI+ISG
Sbjct:   65 GLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         E R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   66 GLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.201e-23
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         + R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:   70 GLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.461e-23
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = -3
Query:  262 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 489
            G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:   75 GNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.132e-23
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++ISG
Sbjct:   68 GLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.132e-23
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         E R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   66 GLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.314e-23
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = -3
Query:  262 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 483
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.314e-23
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         E R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   66 GLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.217e-22
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = -3
Query:  262 GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 528
            GL+         + R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEISG
Sbjct:   66 GLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB304713 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.217e-22
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = -3
Query:  262 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 483
            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV            K+I+ISG
Sbjct:   86 VLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
The following BLAST results are available for this feature:
BLAST of CB304713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HSP11_SOYBN3.201e-2362.9217.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC3.201e-2362.9217.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_PEA3.201e-2362.9218.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS16A_ORYSJ5.461e-2369.7416.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP17_ARATH7.132e-2361.8017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_SOLPE7.132e-2362.9217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_SOYBN9.314e-2374.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP11_SOLPE9.314e-2362.9217.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP14_SOYBN1.217e-2262.9217.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ARATH1.217e-2270.2718.1 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304713 ID=CB304713; Name=CB304713; organism=Citrus sinensis; type=EST; length=530bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTG
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