CB304724

Overview
NameCB304724
Unique NameCB304724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304724_ssr187 microsatellite CB304724_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:81..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24
Identity = 59/113 (52.21%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN-AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C ++LC+LV AP+   AI+  QV +SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAA LP QC V IPYKISPS DC RV+
Sbjct:    8 KLACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = -1
Query:  251 LLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 568
            L+L + + A V  AI+CG V  SLAPC  +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++    +I G+ P++A+ LP +CGV IPY IS S +C  ++
Sbjct:   11 LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = -1
Query:  263 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDC 526
            +TCGQV  +LA CI FL+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A G +RGI PN A ALP +CGV IPYKIS S +C
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNC 87          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            +LV   L+  ++      AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AA +PS CGV +PY IS S DC ++R
Sbjct:    8 QLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C +  C++V  P+T+  A++CG V+  +APCI +L       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AA LP  CGV IPYKIS + +C  V+
Sbjct:    6 KLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            +LV   ++  ++      AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AA +PS CGV +PY IS S DC ++R
Sbjct:    8 QLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            +LV   ++  ++      AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC C+K A G   G+    AA +PS CGV +PY IS S DC ++R
Sbjct:    8 QLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  251 KLVC--ALLLCILVTAP-VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAALPSQCGVRIPYKISPSPDCFRVR 583
            KLVC  A++ C+ V  P    A++CGQV  +L PCI ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A   I     N  +AA LP +CGV IPYKISPS DC  ++
Sbjct:    9 KLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C +L C++V  P+T+  A++CG V+  +APCI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AA LP  CGV IPYKIS S +C  VR
Sbjct:    6 KLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.137e-23
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  251 VCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 577
            VC LLL   +     +AITCGQV + L  C+ + R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK       G+   + A +P +CGV IPY I    DC +VR
Sbjct:    7 VCFLLLLAFLIG-TASAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
The following BLAST results are available for this feature:
BLAST of CB304724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP6_GOSHI2.086e-2452.21Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_ARATH2.086e-2448.11Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP1_PHAAU6.068e-2457.95Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLT41_HORVU7.925e-2446.85Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPD_BRAOT1.766e-2347.79Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLT43_HORVU1.766e-2345.95Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.766e-2345.95Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP3_PRUDU3.933e-2350.00Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_BRANA3.933e-2348.67Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
SCA_LILLO5.137e-2348.62Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304724 ID=CB304724; Name=CB304724; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGGGG
AGACTCGTTCGGACAAAGAAATTAACATAAATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGGGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGGCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCG
GGGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAAG
GAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTT
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