CB304724

Overview
NameCB304724
Unique NameCB304724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304724_ssr187 microsatellite CB304724_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:81..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  254 LVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 580
            +  AL+L +        AI CG V + + PC+ +++ GG  P   CC GV++L+  AR+  DRQ+ACNCLK     I  +  + A ++P +CGV +PY IS + DC RV
Sbjct:    6 MAVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  263 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDC 526
            + CGQV +SLA CIPFL  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A++LP +CGV I   IS + +C
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 88          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = -1
Query:  254 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 532
            +AI+C  V   L PC+ +L +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A AL S CG  +P   SP+ DC  V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  251 VCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 577
            +C LL  I        AI+C  V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AAALP +CGV++PYKI PS +C  ++
Sbjct:    8 LCLLLASIFAWGSEA-AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  263 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAALPSQCGVRIPYKISPSPDC 529
            A++C  V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPS DC
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDC 109          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = -1
Query:  254 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVR-IPYKISPSPDCFRV 541
            PV  AI+C QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DC +V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.402e-12
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = -1
Query:  254 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRV 526
            + CGQV  +L+ C+PFL      P   CC+GV  L   A T  D++ AC C+K A      I+ + A++LP +CGV I   IS + +C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = -1
Query:  275 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISP 523
            TCG V  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPP 120          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = -1
Query:  251 APVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPY-KISPSPDCFRVR 544
            AP      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DC +++
Sbjct:   27 APAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 32/101 (31.68%), Postives = 52/101 (51.49%), Query Frame = -1
Query:  254 LVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPY-KISPSPDCFRV 553
            L +AP      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+  A   I GIK  + A +P +CG+      I+   DC ++
Sbjct:   24 LASAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
The following BLAST results are available for this feature:
BLAST of CB304724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_WHEAT5.501e-1739.45Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPA_RICCO2.090e-1646.59Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP8_ARATH2.090e-1641.94Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPA_ARATH1.355e-1538.74Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH5.149e-1543.48Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA5.693e-1441.24Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO1.402e-1237.36Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT13_PARJU4.511e-1136.14Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT21_PARJU5.891e-1131.31Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT22_PARJU7.694e-1131.68Probable non-specific lipid-transfer protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304724 ID=CB304724; Name=CB304724; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGGGG
AGACTCGTTCGGACAAAGAAATTAACATAAATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGGGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGGCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCG
GGGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAAG
GAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTT
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