CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE-NVGDEEGRLTVTVKIINCGEV 344
            +GGD    DGT   SIY   FPDE+ +LKH   G +SM+ A  DT GSQF IT      LD K+VVFG+++ G  ++  IE    D   R      IIN G++
Sbjct:   97 QGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF + +GT ++SIY  KF DE+   KH   G+LSM+ A  +T GSQF I       LD K+V FG++ +   I++ +E+ G    + +  + I +CG+
Sbjct:   63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -3
Query:   78 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGR 344
            +GGD V   G + ESIY   F DE+  + H++ G+L M    R + GSQF IT +A   LD+KYV FG+L++G ++L  +E+V  E  R
Sbjct:  204 QGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENER 292          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF   +GT ++SIY  KF DE+   KH   G+LSM+ A  +T GSQF I       LD K+V FG++ +   I++ +E+ G    + +  + I +CG+
Sbjct:   63 QGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF    G   ESIY   F DE+  +KH + G LSM+ A ++T GSQF IT      L+  + VFGE+V+G +I+KK+EN   D   R      I +CG++
Sbjct:   73 QGGDFTHGTGIGGESIYGRTFNDENFLVKH-KIGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = -3
Query:   45 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELV-QGHEILKKIENVGDEEGRLTVTVKIINCG 344
            +GGDF   +GT   SIY  +F DE+  LKHDR G++SM+ A  +T GSQF IT      LD ++VVFG++       ++ IE +G   GR +   KI + G
Sbjct:   77 QGGDFENHNGTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIG 176          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = -3
Query:   57 KGGDFVKRDGTSEESIYEGKFPDE-SPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKI 344
            +GGD     G   ESI++  FPDE    LKHD  G+LSM+   +DT GSQF IT+ A   LD  + VFG++V G ++L K+E++  DE+ R    +KI
Sbjct:  337 QGGD-PTGTGKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESIPVDEKDRPEREIKI 433          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVG-DEEGRLTVTVKIINCGEV 344
            +GGD    DG    SIY   F DE   LKH +P LLSM+    ++  SQF IT       + K+VVFGE+++G E++  ++N+  D + +    V+I N GE+
Sbjct:   73 QGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNLEVDGKSKPIAKVRIFNSGEL 175          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = -3
Query:   96 KGGDFVKRDGTSEESIYEGKFPDESP-RLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV 344
            +GGD     G   ESI++ +F DE P  LKH+  G+LSM+ +  DT GSQF IT+  + SL++ Y VFG+++ G E+L  +E V
Sbjct:   52 QGGD-PTNTGRGGESIWKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKV 134          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIC_HUMAN2.749e-1342.72Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PAL4B_HUMAN2.749e-1337.62Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIL6_BOVIN6.125e-1342.70Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PAL4A_HUMAN1.045e-1237.62Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPID_DICDI1.782e-1241.75Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIA_NEOCA6.772e-1241.58Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPIL2_RHIOR1.509e-1143.88Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
CYP9_CAEBR4.390e-1137.86Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL3_DICDI5.733e-1144.05Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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