CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  ESIY  KFPDE+ +LKH +P  LSM+ A RDT GSQF IT      LD K+VVFGE+++G +I+  IEN          V + I + GE+
Sbjct:   91 QGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSED 344
            +GGDF   DGT  +SIY  +FPDE+ +L+H  PGLLSM+ A  D+ GSQF IT      LD K+VVFG++++G +++ KIE    +   +  V V I +CG +S+D
Sbjct:   93 QGGDFTNHDGTGGKSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLLSDD 198          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVSED 344
            +GGDF + +GT  ESIY  KF DE+  LKH  PG LSM+ A  +T GSQF I       LD  +VVFG++  G  ++KKIE +G   G    TV I +CGE+  +
Sbjct:   88 QGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGELKSE 192          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.174e-18
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            + GDF   +GT  +SIY  +FPDE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG + +G +++KKIE+ G + G+ +  + I +CG++S
Sbjct:  104 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.174e-18
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  ESIY  KF DE+ +LKH   G LSM+ A  +T GSQF I       LD K+VVFG + +G +++KK+E  G + G+ T  V I NCG++
Sbjct:   78 QGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.174e-18
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF  ++GT  ESIY  KF DE+   KH   G+LSM+ +  +T GSQF I       LD K+VVFG++V+G +++K IE VG + G+ +  V I +CG++S
Sbjct:   70 QGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.839e-18
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            + GDF   +GT   SIY  +FPDE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG + +G +++KKIE+ G + G+ +  + I +CG++S
Sbjct:  104 QAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.839e-18
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF   +GT  +SIY  KF DE+  LKH  PGLLSM+ +  +T GSQF +T      LD K+VVFGE+ +G ++L++IE  G ++G+    V I +CGE
Sbjct:  199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.839e-18
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = -3
Query:   33 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV---GDEEGRLTVTVKIINCGEVSE 344
            +GGDF  ++GT  ESIY  KF DE+   KHDR GLLSM+ A R+T GSQF IT      LD K+VVFG++++G  + + +ENV   G++  +L V   I  CGE+ E
Sbjct:   83 QGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCV---IAECGELKE 186          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.839e-18
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  +FPDE+ +LKH  PG +SM+ A +DT GSQF IT      LD K+VVFG++++G ++++K+EN   D   +    V I +CG +
Sbjct:   94 QGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIB_YARLI1.664e-1848.54Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIB2_RHIOR1.664e-1845.28Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
CYP1_CAEEL1.664e-1845.71Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIF_RAT2.174e-1843.69Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_DICDI2.174e-1846.08Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
CP18D_ARATH2.174e-1844.66Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
PPIF_MOUSE2.839e-1843.69Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_HUMAN2.839e-1846.53Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPID_HUMAN2.839e-1847.6640 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIB_CHICK2.839e-1844.66Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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