CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF   +GT  +SIY  KF DE+  LKH  PGLLSM+ +  +T GSQF +T      LD K+VVFGE+ +G ++L++IE  G ++G+    V I +CGE
Sbjct:  199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KF DE+  LKH  PG+LSM+ A  +T GSQF I       LD K+VVFG + +G  I++ +E+ G E G+ +  + I NCG++
Sbjct:   63 QGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY  KF DE+   KH +P +LSM+ A ++T GSQF IT      LD K+VVFGE+  G +++K +E VG   G+ +  V I +CG++
Sbjct:   61 QGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = -3
Query:   42 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGE 344
            +GGDF   +GT  +SIY  KF DE+  LKH  PGLLSM+ +  +T GSQF +T      LD K+VVFGE+  G ++L++IE  G ++G+    V I +CGE
Sbjct:  199 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY  KF DE+ +LKH +P LLSM+ A  +T GSQF ITF     LD K+VVFGE+V G + L+  +    ++G+   T+KI++ G V
Sbjct:   61 QGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSGVV 162          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -3
Query:   45 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCG 344
            +GGDF + DGT  +SIY  KF DE+ +LKH  PGLLSM+ A  +T GSQF IT      LD  +VVFG++ +  E++ KIE++G   G +   V I +CG
Sbjct:   60 QGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCG 159          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.842e-18
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  ESIY  KF DE+   KH  PG+LSM+ A   T GSQF I       L+ K+VVFG++V+G +++KK E VG   GR +  V I +CG++
Sbjct:   70 QGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  +SIY  +FPDE+ +LKH  PG +SM+ A +DT GSQF IT      LD K+VVFG++++G E+++K+E+   D   +    V I +CG++
Sbjct:  103 QGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KF DE+   +H  PG+LSM+ A   T GSQF I  +    LD K+VVFG++++G  +++ IE VG   G+ +  V I +CG++S
Sbjct:   70 QGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  ESIY  KF DE+   KH  PG+LSM  A  +T GSQF I  +    LD K+VVFG++V+G ++++ IE VG + GR +  V   +CG++
Sbjct:   70 QGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPIE_PONAB3.707e-1846.53Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIA_RABIT3.707e-1844.12Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_ECHGR3.707e-1844.12Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIE_BOVIN4.842e-1846.53Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIA_PARPR4.842e-1846.08Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPIA2_RHIOR4.842e-1847.00Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
CYPH_SOLLC4.842e-1846.08Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
PPIB_HUMAN6.324e-1844.66Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
CYPH_LUPLU6.324e-1843.69Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYPH_BRANA6.324e-1845.10Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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