CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.324e-18
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  ESIY  KFPDE+ + KH  PG+LSM+ A  +T GSQF +       LD K+VVFG +V+G +++K +E+ G + G+      I +CG++
Sbjct:   70 QGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.259e-18
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEVSED 344
            +GGDF   +GT  ESIY  KFPDE+    HD+P LLSM+ A  +T GSQF IT      LD K+VVFG+L+ G  I+++IE     E+ R    V I++CGE+  D
Sbjct:   70 QGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGELPAD 175          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.259e-18
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVSED 344
            +GGDF + DGT  ESIY  KF DE+  LKHD+P LLSM+ A   T GSQF IT      LD K+VVFG ++    ++++IEN+     R    V I + G +S D
Sbjct:   69 QGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVLSPD 173          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIY-EGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDFV  DGT   +IY   +F DE+  LKHD+PGLLSM+ +  +T G QF IT  A   L+ K+VVFG++V+G ++++ IEN      +    V II CGE+
Sbjct:   79 QGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGD-EEGRLTVTVKIINCGEVSED 344
            +GGDF + DGT  ESIY  KF DE    KHD P LLSM+ A  +T GSQF IT      LD K+VVFG +++G  +++++E+V      R    VKI++CGE++ D
Sbjct:   84 QGGDFTRADGTGGESIYGEKFQDEDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDVKIVDCGELTGD 189          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = -3
Query:   33 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV---GDEEGRLTVTVKIINCGEVSE 344
            +GGDF  ++GT  ESIY  KF DE+   KHDR GLLSM+ A  +T GSQF IT      LD K+VVFG++++G  + + +ENV   G++  +L V   I  CGE+ E
Sbjct:   83 QGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCV---IAECGELKE 186          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = -3
Query:   33 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV---GDEEGRLTVTVKIINCGEVSE 344
            +GGDF  ++GT  ESIY  KF DE+   KHDR GLLSM+ A  +T GSQF IT      LD K+VVFG++++G  + + +ENV   G++  +L V   I  CGE+ E
Sbjct:   83 QGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCV---IAECGELKE 186          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = -3
Query:   33 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV---GDEEGRLTVTVKIINCGEVSE 344
            +GGDF  ++GT  ESIY  KF DE+   KHD+ GLLSM+ A  +T GSQF IT      LD K+VVFG++++G  + K +ENV   G++  +L V   I  CGE+ E
Sbjct:   83 QGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCV---IAECGELKE 186          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = -3
Query:   81 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG 344
            +GGDF K DGT  +SIY  KFPDE+ +LKH  PG+LSM+ A RDT GSQF I       LD ++VVFG +++G +++  +ENV    G
Sbjct:  110 QGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRG 197          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = -3
Query:   30 CSFKGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIE-NVGDEEGRLTVTVKIINCGEVSED 353
            C F  GDF   +GT  ESIY  KF DE+  LKHD+P LLSM+ A  +T GSQ  IT      LD K+VVFGE++QG  +++ IE N  DE  +    VKI +CG +  D
Sbjct:   73 CQF--GDFTNFNGTGGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKIEDCGVLPSD 179          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CYP3_CAEEL6.324e-1843.14Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPID_YARLI8.259e-1847.17Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPID_CRYNE8.259e-1845.71Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIH_ASPOR1.079e-1745.63Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_USTMA1.079e-1746.23Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
PPID_RAT1.079e-1746.7340 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_MOUSE1.079e-1746.7340 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_BOVIN1.079e-1746.7340 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIB_CRYNE1.079e-1750.00Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPID_KLULA1.409e-1747.71Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
back to top