CB304730

Overview
NameCB304730
Unique NameCB304730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  210 KKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 464
            +K+I++DF A+WC PCK ++P+  EL      +IF KVDVDE + +  ++ V+ MPTF+ TK G  +E + G  +DEL+  V +H
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  213 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 470
            A  KL+VVDF+A+WC PCK++ P    L +K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  213 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 470
            A  KL+VVDF+A+WC PCK++ P    L +K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  213 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 470
            A  KL+VVDF+A+WC PCK++ P    L +K   V+F++VDVD+ K +A E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = -2
Query:  216 IVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 455
            +V+DF A+WC PCK+M P L++L +  P V F+K DVDE   +A+E  V AMPTFVL K+G+++ +I+GA    L+  ++
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 125          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = -2
Query:  210 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 491
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+ ++ ++
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.992e-15
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  210 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-ERIVGAKKDELQLAVEKH 470
            A  KL+V+DFTASWC PC+ ++P   E+ K+ P VIF KVDVDE    AE   ++AMPTF   K GK L + + GA +  L+  ++K+
Sbjct:   18 AGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  219 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 491
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATI 101          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -2
Query:  216 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 527
            +V+   + ESWN  + +       IV  FTA WC P   M+    EL       +FL VDVDE+K VA +  V+AMPTF+  K+G  ++++VGA  DE++  V+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = -2
Query:  213 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPA--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 527
            QVIS   ++ +N+    G    K+I++DF A+WC PC+++SPI  +  +K  A  ++F KVDVD    ++EE  + AMPTF + K+G+ ++ +VGA    L+  V+K
Sbjct:    3 QVIS--NLDEFNKLTNSG----KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQK 103          
The following BLAST results are available for this feature:
BLAST of CB304730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
THIO1_CAEEL1.207e-1542.35Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_MACMU1.577e-1543.02Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA1.577e-1543.02Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT2.060e-1541.86Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
TRX3_YEAST3.513e-1546.25Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_MOUSE3.513e-1540.63Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_GEOCY5.992e-1546.59Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_RAT7.826e-1541.94Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
TRXL4_ARATH1.022e-1438.46Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_COPCM1.022e-1438.32Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304730 ID=CB304730; Name=CB304730; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACGCCAAAGACGGTGTGCT
AGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACCAT
ATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCAAT
GAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCAAC
AGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCTC
CCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGGC
ATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACATC
CACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGGCAATTCACTCAAAA
TTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCACC
ACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGGA
TTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATTA
TGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTTC
TGTGTTTGGTGACGGAACTCTTGCAATCTT
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