CB304730

Overview
NameCB304730
Unique NameCB304730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A +KL+VVDF+A+WC PCK++ P    L  K   V+F+++DVD+ + VA    V+ MPTF   K GK ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  228 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 494
            N QL K  A+ KL+V+DF A+WC PCK++SP L+EL  +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   12 NGQLTK--ASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  216 IAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 473
            +   KL+VVDF A+WC PCK ++P   +         F+KVDVD+L  +A E  V AMP+F L K G+ +E IVGA   +L+ +++
Sbjct:   15 VCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  213 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF-VLTKEGKVLERIVGAKKDELQLAVEK 470
            A  KL+VVDF+A+WC PCK++ P    L +K   VIFL+VDVD+ + VA E  V+ MPTF    K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATINE 104          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  240 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKK 491
            + L+  I   KL+V DF A+WC PCK ++P L  + K+   VIF+K+DVDE + VAE++ V AMPT ++ K G  +  +VGA +
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANE 96          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  210 IAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 473
            I+  +L++VDF A WC PCK ++P   E  K    ++F+KVDVDE+  V E+  + +MPTF + K G  ++ ++GA    L+  +EK+
Sbjct:   15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 102          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = -2
Query:  210 AKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 467
            A  L+++DF A WC PCK+++P+L  L  ++ +V+  KV++D+  + AE++ V ++PT +L K+GK ++R+VG K KD L   + +H
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  228 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 512
            H     + QL K  A+ KL+V+DF A+WC PCK++SP L EL  +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   14 HLQADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLE 107          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  216 AAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 470
            A  K +V+D    WC PCK+M+P   EL +KL  V+FLK+D + E K +A+E  +  +PTF + K GK+++ + GAK D+L  A+E
Sbjct:  101 AGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIE 186          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  213 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKK--LPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-----ERIVGAKKDELQLAVEK 494
            N++LQK +++   +VVDF A WCPPCK ++P+  +L  K  +P V+ F KV+VD ++  A+++ + AMPTF+  KEGK +       I GA    L  A EK
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEK 109          
The following BLAST results are available for this feature:
BLAST of CB304730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
THIO_CHICK1.022e-1441.18Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO2_DROYA1.022e-1446.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRX1_SCHPO2.277e-1441.86Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PONAB2.277e-1443.68Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_ECHGR2.277e-1444.05Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_PLAF72.974e-1438.64Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_CHLCV2.974e-1439.08Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIO2_DROME8.653e-1443.75Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TRXF_MESCR1.130e-1343.02Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_FUSCU1.130e-1341.18Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304730 ID=CB304730; Name=CB304730; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACGCCAAAGACGGTGTGCT
AGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACCAT
ATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCAAT
GAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCAAC
AGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCTC
CCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGGC
ATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACATC
CACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGGCAATTCACTCAAAA
TTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCACC
ACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGGA
TTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATTA
TGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTTC
TGTGTTTGGTGACGGAACTCTTGCAATCTT
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