CB304734

Overview
NameCB304734
Unique NameCB304734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:82..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 6.807e-55
Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQ+HGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 8.890e-55
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DAL+S+ NAEKR KRQV+IRP SKV +KFL+VM KHGYIGEFE VDDHR GKI+V LNGRLNKCGVISPRFDV + E+E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+LGFF+
Sbjct:    1 MVRMNVLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.161e-54
Identity = 101/130 (77.69%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVI PRF+V + +IE WT  LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.516e-54
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 2.587e-54
Identity = 100/130 (76.92%), Postives = 115/130 (88.46%), Query Frame = -1 
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+L GRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLTGRLNKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVAGKILGFVY 130
The following BLAST results are available for this feature:
BLAST of CB304734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS22_CANGA6.807e-5578.4640S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS15A_STRPU8.890e-5577.6940S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS22_CANAL1.161e-5477.6940S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS15A_RAT1.516e-5478.4640S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_MOUSE1.516e-5478.4640S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_HUMAN1.516e-5478.4640S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_DROYA1.516e-5478.4640S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME1.516e-5478.4640S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS15A_BOVIN1.516e-5478.4640S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS22_ASHGO2.587e-5476.9240S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304734 ID=CB304734; Name=CB304734; organism=Citrus sinensis; type=EST; length=588bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGGACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAAA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGT
back to top