CB304734

Overview
NameCB304734
Unique NameCB304734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:82..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.912e-29
Identity = 59/130 (45.38%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  +  L DA+ ++ N E  G ++ +I P+SK+I + L VMQ++GYIG FE++DD R+GK +V+L GR+N CGVI PR  V   E E W  R LP+R FG +++TT  G+M H EA+ + +GG++L + Y
Sbjct:    1 MTLMDPLADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.912e-29
Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = -1
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L +AL  + N E+ GK+   I+P+SK+I + L VMQ HGYIGEFE+++D RAG   VEL G++NKCG I PR+ V   E E +  R LP+R FG ++++TS GIM H EA+ K +GG+++ + Y
Sbjct:    7 LANALNHLTNCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.379e-29
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = -1
Query:  196 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 576
            +  L +AL ++ N E RGK+Q +I PSSK+I+  L  +++ GYIG+FE +DD R GKIVV L GR+NK GVI PR+ V   E E W    LPSR  G ++++T  G+M H EA+ K +GG +L + Y
Sbjct:    3 LDTLANALSTIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.379e-29
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  +  L +AL ++ N E RG  +  I P+SK+I + L  MQK GYIGEFEYVDD RAGK +VEL G +N CGVI PR  V   E E +  R LP++ FG I+++T  GIM H+EA+ + +GG++L + Y
Sbjct:    1 MTLMDPLANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.379e-29
Identity = 61/130 (46.92%), Postives = 86/130 (66.15%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +AL ++ NAE  GK   ++RP+SK I   L VMQ  GYIG+FE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++L + Y
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.094e-28
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV + +L++AL  + NAE  GKRQV I P +K+    L V+Q++GY+GE EYVDD R GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++TS G++ H EA+ K +GG +L + Y
Sbjct:    1 MVMLDILSNALIQIKNAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGGVLLAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.429e-28
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIE---GWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +AL ++ NAE R K + +I P+SK+II  L VMQ+ GYIGEFEY+DD R GKI V+L GR+NK GVI PRF V ++++E    W  + LP+   G ++L+T  G++ H+EA  K  GG +L + Y
Sbjct:    1 MVMLDTLANALATIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGGVLLAYVY 133          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = -1
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L +AL  + N E+ GK+ V I+P+SK+I + L VMQ +GYIGEFE+++D RAG   VEL G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+M HEEA+++ +GG++L + Y
Sbjct:    7 LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.184e-28
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +AL ++YN E RG ++ +I P+SK+I   L +MQK GY+GEFEY+DD R GKI V L GR+NKCG I PR  V  ++   +     R LPS+  G ++++TS G+M H+EA +K VGG  + + Y
Sbjct:    1 MVMLDTLANALTTIYNNEVRGNKEAIIMPASKLIANVLRIMQKEGYVGEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGGIAIAYVY 133          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.159e-28
Identity = 58/130 (44.62%), Postives = 90/130 (69.23%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M  +  L +AL  + N+E+ GK++V I+P+SK+I + L VM ++GYIGEFE +DD RAG   V+L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMLENGYIGEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
The following BLAST results are available for this feature:
BLAST of CB304734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METKA4.912e-2945.3830S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_METIG4.912e-2948.3930S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_THEPD8.379e-2947.2430S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_METTH8.379e-2948.4630S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_METAC8.379e-2946.9230S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_PYRAR1.094e-2846.1530S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_STAMF1.429e-2847.3730S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_METJA2.438e-2847.5830S ribosomal protein S8P OS=Methanocaldococcus ja... [more]
RS8_IGNH43.184e-2845.8630S ribosomal protein S8P OS=Ignicoccus hospitalis... [more]
RS8_PYRKO4.159e-2844.6230S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304734 ID=CB304734; Name=CB304734; organism=Citrus sinensis; type=EST; length=588bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGGACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAAA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGT
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