CB304734

Overview
NameCB304734
Unique NameCB304734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:82..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.580e-27
Identity = 60/133 (45.11%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV +  L +AL ++YNAE R K++V++ P+SK+ +  L V+Q+ GYIGEFEY+DD R GKI ++L GR+NK GVI PR+ V  +E+     W  R LP+   G I+++T  G++ H+EA  K  GG +L + Y
Sbjct:    1 MVVMDTLANALSAIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAYCY 133          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27
Identity = 55/130 (42.31%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            MV + +L++AL  + NAE  GK+Q +I P +K+    L V+Q++GY+GE EY+DD + GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G ++++TS G+M H EA+ + +GG +L + Y
Sbjct:    1 MVMLDILSNALIQIKNAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            L DAL ++ N E + K   +I P+SK+I + L  MQK  YIG FEY+DD+RAG+  VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  GIM H EA+ + +GG++L + Y
Sbjct:    7 LADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = -1
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            LND + S+ NA + GKR+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGVI PRF V  + +E + AR LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:    6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = -1
Query:  196 VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 582
            +R   LND + S+ NA + G+R+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGVI PRF V  + +E + +R LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:    1 MRNDTLNDVINSIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.843e-27
Identity = 55/127 (43.31%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  196 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 576
            V  L++A+ ++ NAE  G+++  I+P+SK+I   L VM+ +GYI  FEYV++HR GK +VEL+G +N CG I PRF   V E E +  R LP+R FG ++++T+ G+M  ++AR++ +GG +L + Y
Sbjct:    3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  196 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 561
            +AL  M NAE  G     + P+S +I   L V+   GY+  FEYVDD +AGK  VEL G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V+ + Y
Sbjct:    9 NALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.980e-26
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = -1
Query:  196 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 567
            LND + ++ NA + GK +V+I P+S +I + L VMQ + YI  FE +++ R GK  VEL+  +N CGVI PR  V    IE + +R LP++ FG I+LTT+ GIM H EAR+  +GGK+L + Y
Sbjct:    6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M   ++L +   ++YN E R K +  I P+SK+ I+ L  +QK GYIGEFE++DD R GK  ++L  ++ KCG ISPRF V   E   W  + LP+   G +++TT+ G+M H EA +K +GG ++G+ Y
Sbjct:    1 MPATNILANLFVTLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGGFLIGYVY 130          
BLAST of CB304734 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26
Identity = 50/130 (38.46%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  196 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 585
            M R++ + DA+ ++ NA   G+ + +++P+ ++I + L +M++ GYI E+  ++D R G+  V ++G +NKCG ISPR+ V + E+E W    LPS+  G ++++TS G+M H +ARR  VGG++LG+ Y
Sbjct:    1 MARLNTVADAMSTLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
The following BLAST results are available for this feature:
BLAST of CB304734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_DESK11.580e-2745.1130S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_PYRAE2.696e-2742.3130S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_METS32.696e-2747.5830S ribosomal protein S8P OS=Methanobrevibacter sm... [more]
RS8_THEAC3.520e-2745.1630S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_THEVO7.843e-2742.6430S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]
RS8_ARCFU7.843e-2743.3130S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_HALLT1.024e-2644.2630S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_PICTO2.980e-2645.9730S ribosomal protein S8P OS=Picrophilus torridus ... [more]
RS8_NITMS5.084e-2641.5430S ribosomal protein S8P OS=Nitrosopumilus mariti... [more]
RS8_METHJ5.084e-2638.4630S ribosomal protein S8P OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304734 ID=CB304734; Name=CB304734; organism=Citrus sinensis; type=EST; length=588bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAACACATAATATCATCT
TTCTTCAACTAAAAGGGACCAATCCGAGTTTAAAAATGCATAATTAAATC
AAGTAAAACAAAGAGAAGCTAATCCATTTGCGAACAAGTTCTTCCAAAGT
ACACAAACAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAAA
AAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTGG
TCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTGA
GGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCAA
AACGGGGACTGATAACCCCACATTTGTTCAATCTTCCGTTCAGTTCAACC
ACAATCTTACCAGCTCTGTGGTCATCAACATACTCAAACTCACCAATGTA
CCCGTGCTTTTGCATCACCAGAAGAAACTTAATGATAACCTTGGAGGATG
GTCTGATCATAACCTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTC
TTAAGAGCGTCATTCAGAACACTAACTCTCACCATTGT
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