CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K+D RSG+  E+ P FLK+GDA  V++ P++PMV+E+  E P LGRFA+RDM  T+A G+  +V  K
Sbjct:  356 KLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  360 KLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K+D ++G+  E+ P FLK GDA  V + PTKPMV+E   E P LGRFA+RDM  T+A G+  SV +K
Sbjct:  356 KLDPKTGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  360 KLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  360 KLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K+D ++G+  E+ P F+K GDA  V + PTKPMV+E   E P LGRFA+RDM  T+A G+  SV +K
Sbjct:  356 KLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K++  +G+  E+ P FLK GDA  VK++PTKPMV+E   E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  360 KLNPATGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGMCIDVKAKN 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G   E+ P F+K GDA  + + PTKPMV+E   E P LGRFA+RDM  T+A G+ ++V
Sbjct:  358 KLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = -1
Query:  447 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 626
            K+D  +G+  E+ P FLK G+A FVK+ PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  346 KLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  477 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 626
            K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  364 KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_METPE7.250e-1350.75Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METMP7.250e-1351.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METMA7.250e-1352.24Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METM67.250e-1351.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM57.250e-1351.47Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METAC1.237e-1250.75Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_META31.615e-1251.47Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_METTP2.109e-1250.00Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METS32.109e-1255.00Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_SPOFR2.755e-1260.00Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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