CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1186..1811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = -1 
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KID  SG+  E+ P F++NGDA  V + P KP+ +E  SE P LG FA+RDM QT+A G +  V+++
Sbjct:  355 KIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421
[Close]
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = -1 
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KID  SG+  E+ P F+++GDA  V + P KP+ +E+ +E P LG FA+RDM QTVA G + SV+++
Sbjct:  356 KIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_HALMA3.046e-1147.76Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_NATPD3.978e-1147.76Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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