CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1186..1811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PKFLK+GDA  V MIP KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  378 KIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRRSGK++E  PKF+K+GD+  VKM+P+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  376 KIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRRSGK++E  PKF+K+GD+  VKM+P+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  376 KIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRRSGK LE+EPKF+K+G+A  V+M+P KPM VE F++YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  366 KVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  377 KIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            KIDRR+GK +E+ PKF+K+GDA  VKMIP+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  377 KIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRR+GK +E  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  378 KIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  377 KIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = -1
Query:  417 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 626
            K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE+F++Y PLGRFAVRDMRQTVAVGVIKSV+K D S
Sbjct:  378 KVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 447          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D
Sbjct:  377 KIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A0_XENLA4.098e-2480.60Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A2_RHIRA6.989e-2470.42Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA6.989e-2470.42Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_STYLE2.034e-2370.42Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_SORMA2.034e-2377.27Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PODCU2.034e-2377.27Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_PIRIN2.034e-2370.42Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_NEUCR2.034e-2377.27Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_CAEEL2.034e-2372.86Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_AJECG2.034e-2375.00Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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