CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1186..1811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+KK+  G
Sbjct:  370 KMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            KIDRR+GK +E+ PKF+K+GDA  VKM+P+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  377 KIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            ++DRRSGK LE +PKF+K GDA  +KM P+KPM VE+F EYPPLGRFAVRDM+QTVAVGVIK V+KK+  G
Sbjct:  263 RLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSV+KK
Sbjct:  378 KIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  378 KIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  378 KIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D SG
Sbjct:  378 KVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  378 KIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  378 KIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  378 KIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_PORYE2.656e-2371.83Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_PODAN2.656e-2375.76Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_EIMBO2.656e-2370.42Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_DANRE2.656e-2379.10Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A2_RAT2.656e-2377.61Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT2.656e-2377.61Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_OSCTI2.656e-2371.83Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A2_MOUSE2.656e-2377.61Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN2.656e-2377.61Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN2.656e-2377.61Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
back to top