CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:1186..1811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.748e-20
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = -1
Query:  414 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 626
            KIDRRSGKELE EPKF+K+GDA  V M P KPM VE+F++YPPLG  +  DMRQTVAVGVIKSV+KK+ +G
Sbjct:  366 KIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.688e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K DRR+GK  E EPK +K+GDA  + ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIKSV+ K+
Sbjct:  378 KCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            KID+RSGK +E+ PK +K+GD+  V + P KPMVVETF+EYPPLGRFA+RDMRQT+AVG+I  + +K+
Sbjct:  364 KIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K D+RSGK  E+ PKFLK GDAG +++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ + KK
Sbjct:  366 KADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = -1
Query:  435 KIDRRSGKELEK-EPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            KIDRR+GK +E  EP+++KNGD+  VK++PTKP+ VE F+++PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  364 KIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPK---FLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            K+DRR+G  + KE      LKNGDA  V++ P++PM VE+F+EYPPLGRFAVRDMRQTVAVGVIKS  KK P  A
Sbjct:  366 KVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKA 440          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = -1
Query:  411 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 626
            KIDRR+GK+LE  P  LK+GDA  + + P KP  VE F +YPPLGRFA RD++QTVAVGV+KSV+ K  + A
Sbjct:  381 KIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHKAGAAA 452          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = -1
Query:  438 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 626
            ++D+R+GK L + P  +KNG +   +++P+KPM VETFS+YPPLGRFAVRDMRQTVAVG+IKS
Sbjct:  367 EMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            K + R+GK +E+ PKFLKNG++G V+++PTKP+ VE FS+Y  LGRF +RDM++TVAVGVI+ V  K
Sbjct:  363 KNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHK 429          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  426 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 626
            KID ++GKE+EK P+FLK+GD+  VKM P K +VVE F E+P LGRFA+RDM +TV VGV+  V  K
Sbjct:  364 KIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_EUGGR2.748e-2070.42Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A2_DROME4.688e-2066.18Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_PLAFK6.123e-2063.24Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A1_EUPCR7.997e-2067.16Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_ENTHI3.039e-1966.15Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_DICDI1.155e-1864.00Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_XENLA4.388e-1859.72Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_BLAHO9.775e-1863.49Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A2_EUPCR1.844e-1658.21Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_SULTO9.149e-1659.70Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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