CB304745

Overview
NameCB304745
Unique NameCB304745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G+E EK P+FLK GD   VK  P KP+ VE ++E+PPLGRFA+RDM +TV VG+I  V
Sbjct:  364 KLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            ++D ++GKE EK P+F+K G++  VK  P KP+ VE FS++PPLGRFA+RDM +TV VGVI  V
Sbjct:  364 RLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDV 427          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G+ +EK P+FLK GDA  VK  P KPMV+E +SE+P LGRFA+RDM +T+ +G++  V
Sbjct:  366 KLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDV 429          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+GK +E+ P+F+K GDA  V+  P KP+VVE +S++PPLGRFA+RDM +T+ +GV+  V
Sbjct:  365 KLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDV 428          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            KID R+GK +E+ P FLK GDA  V   P KPMV+E F E+ PLGRFA+RDM +TV +G++  V
Sbjct:  368 KIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDV 431          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  429 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 626
            K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P LGRFA+RDM QTVA G++ S+ K
Sbjct:  361 KLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKELPQLGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  423 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 626
            K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  361 KLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G+ +E++P+F+K GD   VK+ P KP+V E FS++PPLGRFA+RDM +T+A G I  V
Sbjct:  373 KLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEV 436          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G+ +E++P+F+K GD   VK+ P KP+V E FS++PPLGRFA+RDM +T+A G I  V
Sbjct:  373 KLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEV 436          
BLAST of CB304745 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  435 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 626
            K+D R+G+ +E++P+F+K GD   VK+ P KP+V E FS++PPLGRFA+RDM +T+A G I  V
Sbjct:  373 KLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEV 436          
The following BLAST results are available for this feature:
BLAST of CB304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
EF1A_SULSO2.662e-1557.81Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_METS53.477e-1556.25Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_HYPBU5.931e-1554.69Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_STAMF1.012e-1453.13Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_IGNH42.943e-1456.25Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_THESM3.844e-1453.03Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_THEON5.020e-1450.00Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_PYRCJ5.020e-1453.13Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR5.020e-1453.13Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRAE5.020e-1453.13Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304745 ID=CB304745; Name=CB304745; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTG
AAAATGGCAAACTAGATAGAACATAAAACATCAACAAACAACATCTTAAG
GAGCTCAGCAGAGACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGT
TTGAACATGACATGGACAACAAAAATAGACTCAATACAGTAATCTCGCCA
CCGCCGATCAAGAACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTG
ACGAATTGTAATTATAACCAGCAAATTGACGACCCAAACATCCAACACAT
TTATGCCTAAAAAGAACACAATCTTTATTGTGATGACGCCTATAGACATT
ACTTGCAGACAAAGATACCAGCACAGTTCACTTCTTCTTCACAGCAGACT
TGGTTACCTTGGCTCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACT
CCAACAGCGACGGTCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGG
GGGATATTCGGAGAAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCT
TAACAAACCCAGCATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGC
TCCTTACCAGATCGCCTGTCAATCTT
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