CB304749

Overview
NameCB304749
Unique NameCB304749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.713e-32
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = -3
Query:  236 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAV 550
            EG V +CH+ E W  +LQ+ I  K+L+ VDFTA+WC PC+++ P+  EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKK +L+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.135e-30
Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = -3
Query:  227 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 562
            + AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+K +LQ  + KH
Sbjct:    1 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.135e-30
Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = -3
Query:  227 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 562
            + AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+K +LQ  + KH
Sbjct:    1 MAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.912e-29
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  227 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 547
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K E++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.912e-29
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  227 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 547
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K E++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.721e-29
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  227 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 547
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K E++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.842e-22
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = -3
Query:  230 EAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 559
            E+E  +V+   +   W     +   + KL+VVDF+ASWC PC+++ P +  +A K   V F+K+DVDEL  VA+E+ V AMPTFVL K GK +ERI+GAKK EL+  V K
Sbjct:   21 ESEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = -3
Query:  236 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAV 562
            +E   G V    T ESW+++L +     K++V +F+A+WC PCK+++P   EL++K  +++FL VDVDEL   +  W ++A PTF   K G+ + ++VGA K ELQ  V
Sbjct:   18 VEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = -3
Query:  227 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 547
            G VI   +  +W+ QL KG    K IVVDFTA+WC PCK+++P+   L+      VIFLKVDVD + +VAE   + AMPTF + K+G   + +VGA + +L+  V KH
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 110          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.784e-17
Identity = 38/105 (36.19%), Postives = 66/105 (62.86%), Query Frame = -3
Query:  248 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGEL 562
            +E   G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL +DVDEL   +  W ++A PTF   ++G+ ++++VGA K EL
Sbjct:   19 IELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
The following BLAST results are available for this feature:
BLAST of CB304749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
TRXH_PICMA5.713e-3254.29Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ3.135e-3050.89Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI3.135e-3050.89Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRAOL5.912e-2955.14Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA5.912e-2955.14Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_BRARA7.721e-2955.14Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH2_ARATH1.842e-2247.27Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH9_ARATH5.546e-1940.37Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_CHLRE7.244e-1945.37Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRXH_POPJC1.784e-1736.19Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304749 ID=CB304749; Name=CB304749; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGAAATAAACTTTCAGAC
GCCAAAGACGGTGTGCTAGAAGATTGTCATTTATTCGTATATACAGGCCT
GTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAACACACACCT
TACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAGCATTAGCA
GTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAG
CTCACCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCG
TCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAGCGACGGAC
TTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTT
CGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGGGCACCATG
AAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGG
AGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACTTGTCCCTC
CTCGGCCTCTAGAATCC
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