CB304749

Overview
NameCB304749
Unique NameCB304749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  227 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGE-LQLAVEKH 484
            A  L++VDF A WC PC++++PIL  LA +LP V   K+++DE    AE + V ++PT +L K+G  + R+VG K  E L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 487
            A  K +V+D    WC PCK+M+P   ELA+KL  V+FLK+D + E K +A+E  +  +PTF + K GK+++ + GAK  +L  A+E
Sbjct:  101 AGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIE 186          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 33/87 (37.93%), Postives = 59/87 (67.82%), Query Frame = -3
Query:  227 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 484
            A  L+++DF A WC PCK+++P+L  L  ++ +V+  KV++D+  + AE++ V ++PT +L K+GK ++R+VG K K  L   + +H
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 33/88 (37.50%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  227 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 490
            + AK L+VV F A W P C  M+ +++ELAK+LP V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   28 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRH 115          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = -3
Query:  227 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 529
            + VES+ +   + I+A K+ VVDF A WC PCK + P L +L+++     F+ V+ D+   +A++  V A+PT VL ++G+ L+RIVGA    L   + K+
Sbjct:   20 NAVESFGDYNTR-ISADKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  233 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 523
            ++S  E  +K   A   +VVDF A+WC PCK ++P L +L++    + F KVDVDEL  VA    V AMPTF   K G+  E + GA    +Q  V+
Sbjct:    6 IKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVK 102          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  227 AAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 487
            A  KL+VVDFTA+WC PC+ + PI   L+K      V+FLKVDVD+   V+    ++ MPTF   K G+ ++   GA +  L+  +  H
Sbjct:   18 AGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 33/90 (36.67%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  227 IAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKGELQLAVEKH 490
            + ++KL++VDF A WC PC+++SP++ ELA++ +  V  +K++ DE  S++ E+ + ++PT +L K+GK ++ ++GA  K  L  A++K+
Sbjct:   17 VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: GLRX5_SCHPO (Monothiol glutaredoxin-5 OS=Schizosaccharomyces pombe GN=grx5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  227 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 523
            VE + E LQ G   +++I+++F A W  PCK M+ +  + AK     +FLK++ ++   +AE + V A+P FVL    KVL RI GA   +L+ A++++
Sbjct:    8 VEQFQEILQNG--KEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEY 104          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 32/86 (37.21%), Postives = 58/86 (67.44%), Query Frame = -3
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 487
            A  K +V+D    WC PCK+++P+  EL++K   V+FLK+D + + KS+A+E  ++ +PTF + K+ K+++ + GAK  +L  A++
Sbjct:   92 AGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAID 177          
The following BLAST results are available for this feature:
BLAST of CB304749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
THIO_CHLPN7.016e-1442.53Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TRXF_MESCR1.563e-1343.02Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_CHLCV1.563e-1337.93Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
GLRX3_HUMAN2.666e-1337.50Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
TRX2_SCHPO7.757e-1337.62Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_PENCH7.757e-1341.24Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_ICTPU7.757e-1340.45Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_CYACA7.757e-1336.67Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
GLRX5_SCHPO7.757e-1336.36Monothiol glutaredoxin-5 OS=Schizosaccharomyces po... [more]
TRXF_PEA1.013e-1237.21Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304749 ID=CB304749; Name=CB304749; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGAAATAAACTTTCAGAC
GCCAAAGACGGTGTGCTAGAAGATTGTCATTTATTCGTATATACAGGCCT
GTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAACACACACCT
TACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAGCATTAGCA
GTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAG
CTCACCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCG
TCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAGCGACGGAC
TTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTT
CGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGGGCACCATG
AAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGG
AGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACTTGTCCCTC
CTCGGCCTCTAGAATCC
back to top