CB304749

Overview
NameCB304749
Unique NameCB304749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  227 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 487
            +AK L VV F A W P C  M+ +++ELAK+ P V+F+K++ + +  V+E++ V ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   20 SAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRH 106          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 31/88 (35.23%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  245 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVG-AKKGELQ 505
            +L + ++  K +VVDF A+WC PCK++ PI  E+A+      F+KVDVD+   ++ E+ + ++PT +  ++GK+ ++ +G   K EL+
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELK 96          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 37/114 (32.46%), Postives = 68/114 (59.65%), Query Frame = -3
Query:  227 AEEGQ----VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 556
            AE G+    V+   + + + E L+  +  K L+VV F A W P C  M+ +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:    6 AEAGEAAVAVVEVGSAQQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  245 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL--PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQ 541
            VI   + + W   + K       + VD  A WC PCK +SP+ S+LA K   P  +F KV+VDE + +A    V+AMPTFV  + GK ++ + GA    L+
Sbjct:    3 VIEIRSYQHWISTIPKS----GYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALK 99          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 487
            A  K++V+D    WC PCK+++P   EL++K   ++FLK+D + + K +A+E  +  +PTF + K+ KV++ + GAK  +L  A+E
Sbjct:   95 AGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 487
            A +KL+V+D    WC PCK+++P    L++K   V+FLK+D + + + +A+E  +  +PTF + K+ KV++ + GAK  +L  A+E
Sbjct:   85 AGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIE 170          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  227 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 511
            NE L+K   + +LI+VDF A+WC PC+++SP    L+ +     FLKV+ D  + +   +++ AMPTF+  K  + ++ + GA +  +   + KH
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKH 106          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  227 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 541
            V+   +   + E L+  +  K L+VV F A W P C  M+ +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H
Sbjct:   15 VVEVGSARQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRH 117          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = -3
Query:  230 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEK 553
            EEG V      E + E L+   A +KL+ VDF+A+WC PC++M P+   L+ K   VIFL+VD ++ + + ++  +  +PTF   K  + +    GA  G+L+ ++ +
Sbjct:  408 EEGLVRVIKDKEEFEEVLKD--AGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 31/86 (36.05%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 487
            A +K++V+D    WC PCK+++P    L++K   V+FLK+D + E + +A+E  +  +PTF + K+ +V++ + GAK  +L  A+E
Sbjct:   88 AGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIE 173          
The following BLAST results are available for this feature:
BLAST of CB304749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
GLRX3_XENTR1.013e-1237.93Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_MYCGA2.257e-1235.23Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
GLRX3_MOUSE2.948e-1232.46Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
TXL1_SCHPO3.850e-1237.62Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
TRXF2_ARATH3.850e-1237.21Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXF1_ARATH5.028e-1237.21Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
NGLY1_CAEBR6.567e-1233.68Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
GLRX3_RAT6.567e-1232.38Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
TXND2_MOUSE8.576e-1233.33Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXF_BRANA1.120e-1136.05Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304749 ID=CB304749; Name=CB304749; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGAAATAAACTTTCAGAC
GCCAAAGACGGTGTGCTAGAAGATTGTCATTTATTCGTATATACAGGCCT
GTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAACACACACCT
TACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAGCATTAGCA
GTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAG
CTCACCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCG
TCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAGCGACGGAC
TTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTT
CGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGGGCACCATG
AAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGG
AGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACTTGTCCCTC
CTCGGCCTCTAGAATCC
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