CB304749

Overview
NameCB304749
Unique NameCB304749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  260 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 526
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KV+ DE + ++ ++ + ++PT + TK+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  233 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVE 487
            A  K +V+D    WC PCK M+P   +LA++   VIFLK+D + E K++A+E  +  +PTF + KE  V+  + GAK  +L  A++
Sbjct:  100 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQ 185          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  260 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 490
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD    +A E+ V ++PT +L + G+ ++RIVGAK
Sbjct:  364 LSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAK 441          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  260 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 490
            + + K ++VDF A+WC PCK+++P+L E+A +      V  + VDVD   + A ++ V ++PT +L K+G  ++RIVGAK
Sbjct:   20 LGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAK 99          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 30/86 (34.88%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  227 KLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKGELQLAVEKH 478
            K ++VDF ASWC PC ++ P++ +LA       I  K++VDE  ++A ++ + ++PT ++ K GKV++++VGA  K  +   +++H
Sbjct:   21 KAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEH 106          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  227 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 526
            T   ++ +++ G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  227 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 526
            T   ++ +++ G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  227 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 469
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  227 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 469
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  227 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KGELQLAVEKH 469
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K  L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
The following BLAST results are available for this feature:
BLAST of CB304749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
THIO_HELPJ2.495e-1134.44Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
TRXF_SPIOL7.260e-1139.53Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXB_MYCLE7.260e-1139.74Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_MYCSM7.260e-1140.00Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO_CHLLT7.260e-1134.88Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_STAES9.482e-1134.31Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ9.482e-1134.31Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAAW9.482e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU9.482e-1139.76Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS9.482e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304749 ID=CB304749; Name=CB304749; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGAAATAAACTTTCAGAC
GCCAAAGACGGTGTGCTAGAAGATTGTCATTTATTCGTATATACAGGCCT
GTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAACACACACCT
TACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAGCATTAGCA
GTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAG
CTCACCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCG
TCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAGCGACGGAC
TTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTT
CGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGGGCACCATG
AAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGG
AGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACTTGTCCCTC
CTCGGCCTCTAGAATCC
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