CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_NITOC (Argininosuccinate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=argG PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.001e-55
Identity = 103/184 (55.98%), Postives = 135/184 (73.37%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTK--KSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL+E Y CEVV FTAD+GQG +E+     KA+  G  ++ ++DL+EEF +DY+FP  RA  +YE +YLLGTS+ARP+IAK + ++A   GADAVAHG TGKGNDQVRFEL  +AL P++ V+APWREWD+  RE  + YA+ H +PV   +  +S YS D NL H+S+EG  LEDP
Sbjct:   15 LDTSVILKWLQETYDCEVVTFTADIGQG-EEVAPARAKAETLGVKEIYIEDLREEFCRDYVFPMFRANTLYEGEYLLGTSIARPLIAKRLAEIASATGADAVAHGATGKGNDQVRFELGVYALQPDIQVIAPWREWDLTSREKLLAYAETHGIPVEGKRGGRSPYSMDANLLHISYEGGPLEDP 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_DESVV (Argininosuccinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=argG PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.001e-55
Identity = 105/182 (57.69%), Postives = 137/182 (75.27%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL   Y CEVV  TAD+GQ  ++LDG+++KA  +GA +  V+DL+EEF +D+IFP +RAGA+YE +YLLGTS+ARP+IAK +V++AR  GA AVAHG TGKGNDQVRFEL   AL P+L V+APWREWD++ R     +A++H +P+  + K  YS DRN+ H S EG  LEDP
Sbjct:   15 LDTSVILKWLAVTYNCEVVTLTADLGQE-EDLDGVDDKAMRTGASRAYVEDLQEEFARDFIFPMMRAGAVYEGRYLLGTSIARPLIAKRLVEIARAEGAQAVAHGATGKGNDQVRFELAVNALAPDLRVIAPWREWDLRSRTQLNAFAEEHGIPISNSAKQ-YSMDRNMLHCSFEGGELEDP 194          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_MESSB (Argininosuccinate synthase OS=Mesorhizobium sp. (strain BNC1) GN=argG PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.307e-55
Identity = 102/184 (55.43%), Postives = 138/184 (75.00%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTK--KSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+ WL+   G EVV FTAD+GQG +EL+    KA+  G  ++ ++DL+EEFV+D++FP  RA A+YE  YLLGTS+ARP+IAK +V++A E GADA+AHG TGKGNDQVRFELT +ALNP++ V+APWR+W  + R D + +A+ H +PVP  K  ++ +S D NL H S EG +LEDP
Sbjct:   18 LDTSIILKWLQTELGAEVVTFTADLGQG-EELEPARRKAEMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSIARPLIAKRLVEIAAETGADAIAHGATGKGNDQVRFELTAYALNPDIKVIAPWRDWTFKSRTDLLNFARDHQIPVPSDKQGEAPFSVDANLLHSSSEGKVLEDP 200          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_NITWN (Argininosuccinate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=argG PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.707e-55
Identity = 102/186 (54.84%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQ--LVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKK--SIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+ WL+  YG EVV FTAD+GQG +EL+    KA+  G     + ++DL+EEFV+DY+FP  RA A+YE +YLLGTS+ARP+IAK  +++A +VGADAVAHG TGKGNDQVRFEL ++AL P++ ++APWREWD++ RE  I +A++H +P+   K+  + +S D NL H S EG +LEDP
Sbjct:   16 LDTSIILKWLQTTYGAEVVTFTADLGQG-EELEPARRKAQLLGIKDENIFIEDLREEFVRDYVFPMFRANAVYEGQYLLGTSIARPLIAKKQIEIAEKVGADAVAHGATGKGNDQVRFELGYYALKPDITIIAPWREWDLRSREQLIAFAEQHQIPIAKDKRGEAPFSVDANLLHASSEGKVLEDP 200          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_EHRCJ (Argininosuccinate synthase OS=Ehrlichia canis (strain Jake) GN=argG PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.707e-55
Identity = 102/184 (55.43%), Postives = 132/184 (71.74%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKS--IYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL+ENY CEVV FTAD+GQ   ++  + +KA A    ++ ++DLKEEFVKD++FP  RA  +YE  YLLGTS+ARP+IAK  +++A+  GAD VAHG TGKGNDQ+RFE  ++  NP + V+APWR+W +  R   IEYAKKH + VP+ K S   YS D NL H S+EG  LEDP
Sbjct:   12 LDTSVILKWLQENYNCEVVVFTADLGQD-DDMSVIRQKATALNVKEIFIEDLKEEFVKDFVFPMFRANTVYEGYYLLGTSIARPLIAKRQIEIAKLTGADTVAHGATGKGNDQIRFEFGYYCCNPNIKVIAPWRQWKLTSRNSLIEYAKKHGINVPLDKSSEPPYSIDANLLHTSYEGKSLEDP 194          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_DEIDV (Argininosuccinate synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=argG PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.230e-55
Identity = 102/182 (56.04%), Postives = 135/182 (74.18%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+ WL+     +VVCFTAD+GQG  E++    KA  +GA      DL+EEFV+DY+FP  R+ A+YE  YLLGTS+ARP+IAK MV++A++ GA AV+HG TGKGNDQVRFE+T +AL P++  VAPWR+W+ QGR D   +A +H +PVP TKK  +S D N+ H+S+EG ILEDP
Sbjct:   14 LDTSIILKWLQTERNYDVVCFTADLGQG-DEVEEARVKALNTGAVAAYALDLREEFVRDYVFPMFRSSALYEGYYLLGTSIARPLIAKKMVEIAQKEGAVAVSHGATGKGNDQVRFEMTAYALQPDIVTVAPWRDWEFQGRADLEAFAHEHGIPVPTTKKDPWSTDANMLHISYEGGILEDP 194          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_AZOC5 (Argininosuccinate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=argG PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.912e-55
Identity = 103/186 (55.38%), Postives = 140/186 (75.27%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGAC--QLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKK--SIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL+  Y CEVV FTAD+GQG +EL+   +KA+  G     + ++D++EEFV+DY+FP  RA A+YE +YLLGTS+ARP+IAK  +++AR+VGADAV+HG TGKGNDQVRFEL ++AL PE+ V+APWREWD+  R   +E+A+ H +P+   K+  + +S D NL H S EG +LEDP
Sbjct:   16 LDTSVILKWLQTTYRCEVVTFTADLGQG-EELEPARKKAELLGIKPENIFIEDVREEFVRDYVFPMFRANAVYEGQYLLGTSIARPLIAKKQIEIARKVGADAVSHGATGKGNDQVRFELGYYALEPEITVIAPWREWDLTSRTKLLEFAETHQIPIAKDKRGEAPFSVDANLLHSSSEGKVLEDP 200          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_DEIGD (Argininosuccinate synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=argG PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.803e-55
Identity = 103/182 (56.59%), Postives = 134/182 (73.63%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+ WL+     +VV FTAD+GQG  E++    KA  +GA      DL+EEFV+DY+FP  RA A+YE  YLLGTS+ARP+IAK +V++A + GA AV+HG TGKGNDQVRFE+T +AL P++  VAPWR+WD QGR D   +A++H +PVP TKK  +S D NL H+S+EG ILEDP
Sbjct:   20 LDTSIILKWLQTERNYDVVTFTADLGQG-DEVEEARVKALNTGAVAAYALDLREEFVRDYVFPMFRAAALYEGYYLLGTSIARPLIAKKLVEIAEKEGAVAVSHGATGKGNDQVRFEMTAYALKPDIVTVAPWRDWDFQGRADLETFAREHGIPVPTTKKDPWSTDANLLHISYEGGILEDP 200          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_CAMLR (Argininosuccinate synthase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=argG PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.803e-55
Identity = 106/185 (57.30%), Postives = 138/185 (74.59%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQ--LVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVP-VPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+ WL++ Y  EVV FTAD+GQG +EL+   +KA + G  +  + +KDLK+EFVKDY+F   RA AIYE +YLLGTS+ARP+IAKA+V++A +  ADA++HG TGKGNDQVRFEL   ALNP L ++APWREWD+  RE  + YA+KH +  V    KS YS D NL H+S+EG +LEDP
Sbjct:   16 LDTSIILKWLQDEYKSEVVTFTADIGQG-EELEPARKKALSLGVKEENIFIKDLKDEFVKDYVFAMFRANAIYEGEYLLGTSIARPLIAKALVEIANKTNADAISHGATGKGNDQVRFELGALALNPNLAIIAPWREWDLNSREKLLAYAQKHGIDIVKKADKSPYSMDANLLHISYEGLVLEDP 199          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_NOVAD (Argininosuccinate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=argG PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.967e-55
Identity = 106/186 (56.99%), Postives = 136/186 (73.12%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQ--LVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKK--SIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL+  Y CEVV FTAD+GQG +EL+    KAK  G     + + DL+EEFV+D++FP +RA A YE  YLLGTS+ARP+I+K ++++ARE GADAVAHG TGKGNDQVRFEL+ +AL P + V+APWREWD+  R   I +A+ H +PVP  K+  S +S D NL H S EG +LEDP
Sbjct:   15 LDTSVILKWLQVTYNCEVVTFTADLGQG-EELEPARAKAKLMGVPDHHIYIDDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLIEIARETGADAVAHGATGKGNDQVRFELSAYALEPGIKVIAPWREWDLTSRTALIAWAEAHQIPVPKDKRGESPFSTDANLLHTSSEGKVLEDP 199          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_NITOC1.001e-5555.98Argininosuccinate synthase OS=Nitrosococcus oceani... [more]
ASSY_DESVV1.001e-5557.69Argininosuccinate synthase OS=Desulfovibrio vulgar... [more]
ASSY_MESSB1.307e-5555.43Argininosuccinate synthase OS=Mesorhizobium sp. (s... [more]
ASSY_NITWN1.707e-5554.84Argininosuccinate synthase OS=Nitrobacter winograd... [more]
ASSY_EHRCJ1.707e-5555.43Argininosuccinate synthase OS=Ehrlichia canis (str... [more]
ASSY_DEIDV2.230e-5556.04Argininosuccinate synthase OS=Deinococcus deserti ... [more]
ASSY_AZOC52.912e-5555.38Argininosuccinate synthase OS=Azorhizobium caulino... [more]
ASSY_DEIGD3.803e-5556.59Argininosuccinate synthase OS=Deinococcus geotherm... [more]
ASSY_CAMLR3.803e-5557.30Argininosuccinate synthase OS=Campylobacter lari (... [more]
ASSY_NOVAD4.967e-5556.99Argininosuccinate synthase OS=Novosphingobium arom... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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