CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_CHLP8 (Argininosuccinate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=argG PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.947e-49
Identity = 96/183 (52.46%), Postives = 128/183 (69.95%), Query Frame = -1
Query:   32 LDTSVIVPWLRENY-GCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV++ WL++ Y G E+V  T ++GQ + E+D LE KA A+GA      DL++ FV+D I+  L+AGA+YE  Y L T++ RP++AKA+VDVA   G   + HGCTGKGNDQVRFE+TF +L P + VVAP REW+   RE  I YA +HN+PV  TKK+ YS D N+W +S E  +LEDP
Sbjct:   14 LDTSVMIKWLKDKYEGAEIVAVTGNLGQKM-EVDNLEPKALATGAASFHFVDLRKTFVEDCIWKALKAGALYEDVYPLATALGRPILAKALVDVALAEGCTMLTHGCTGKGNDQVRFEVTFASLAPHMKVVAPLREWEFTSREQEITYALEHNIPVSATKKNPYSIDENIWGISIECGVLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_XENLA (Argininosuccinate synthase OS=Xenopus laevis GN=ass1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.073e-49
Identity = 93/186 (50.00%), Postives = 139/186 (74.73%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+ WL+E  G +V+ + A++GQ  ++ +   +KA   GA ++ ++D++++FV++YI+P ++A AIYE +YLLGTS+ARP IAK  V++A++  A+ V+HG TGKGNDQ+RFELT ++L PE+ ++APWR  +     +GR D +EYAKKHN+ VPVT KS +S D NL H+S+EG ILE+P
Sbjct:   16 LDTSCILVWLKEQ-GFDVIAYLANIGQN-EDFEEARKKAVNLGAKKVYIEDIRQQFVEEYIWPAVQANAIYEDRYLLGTSLARPCIAKKQVEIAKKEAAEYVSHGATGKGNDQIRFELTCYSLYPEVKIIAPWRMPEFYNRFRGRSDLMEYAKKHNISVPVTPKSPWSMDENLMHISYEGGILENP 199          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PROM0 (Argininosuccinate synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=argG PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.073e-49
Identity = 100/183 (54.64%), Postives = 134/183 (73.22%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L++ YG  EVV F AD+GQG ++L+ + +KA  SGA Q +V +L   FV+ Y FP +RA A+Y  KY L T++ARP+IA+ +V++ARE+ ADAVAHGCTGKGNDQVRF+L   AL P+L ++ P REW++  RE+AIEY +K  +P PV+KKS YS D NL   S E  ILEDP
Sbjct:   15 VDTSVCIPYLKKEYGVSEVVTFVADLGQG-EDLELIRQKALNSGASQSIVGNLVNSFVERYAFPAIRANALYLDKYPLSTALARPLIAENLVNIAREISADAVAHGCTGKGNDQVRFDLAINALGPDLKIITPAREWNM-SREEAIEYGEKFGIPAPVSKKSPYSIDVNLLGRSIEAGILEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_ANAVT (Argininosuccinate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=argG PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.073e-49
Identity = 97/183 (53.01%), Postives = 132/183 (72.13%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L++ +G E V+   AD+GQG  EL+ + EKA  SGA + +V D+KE F+KDY FP ++A A+YE +Y LGT++ARP+IAK +V+ A + GADA+AHGCTGKGNDQVRF+++  ALNP+L ++AP REW +  RE  I Y +K  +P PV K S YS D+NL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKQEWGVEEVITLAADLGQG-DELEPIREKALKSGASESLVADVKESFIKDYAFPAIQANALYENRYPLGTALARPLIAKILVEAAEKYGADAIAHGCTGKGNDQVRFDVSCTALNPKLKILAPAREWGM-SREATIAYGEKFGIPSPVKKSSPYSIDKNLLGRSIEAGALEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_THESQ (Argininosuccinate synthase OS=Thermotoga sp. (strain RQ2) GN=argG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.185e-48
Identity = 98/186 (52.69%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL E  G +V+ + A+VGQ   + D ++EKA  +GA ++ V+DL+ EFV DYIF  L   A+YE +YLLGT++ARP+IAK  V++A + GA  VAHG TGKGNDQVRFELT+ ALNP L V++PW++ +     +GR D I YA +  +P+ V+KK  YS D NL H+SHE   LEDP
Sbjct:   13 LDTSVILKWLCEK-GFDVIAYVANVGQK-DDFDAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDP 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_THEP1 (Argininosuccinate synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=argG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.185e-48
Identity = 98/186 (52.69%), Postives = 131/186 (70.43%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL E  G +V+ + A+VGQ   + D ++EKA  +GA ++ V+DL+ EFV DYIF  L   A+YE +YLLGT++ARP+IAK  V++A + GA  VAHG TGKGNDQVRFELT+ ALNP L V++PW++ +     +GR D I YA +  +P+ V+KK  YS D NL H+SHE   LEDP
Sbjct:   13 LDTSVILKWLCEK-GFDVIAYVANVGQK-DDFDAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDP 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SYNSC (Argininosuccinate synthase OS=Synechococcus sp. (strain CC9605) GN=argG PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.185e-48
Identity = 100/183 (54.64%), Postives = 133/183 (72.68%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L++ +G E V+ F AD+GQG  EL+ + +KA  +GA Q +V DL E F+KD+ FP +RA A+YE +Y L T++ARP+IAK +V+VAREVGADAVAHGCTGKGNDQVRF++   AL P+L V+ P REW +  RE+ I Y ++  +P PV+KKS YS D NL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKQEWGVEDVITFAADLGQG-DELEPIRQKALDAGASQSLVGDLIEPFIKDFAFPAIRANALYEGRYPLSTALARPLIAKRLVEVAREVGADAVAHGCTGKGNDQVRFDVAIAALAPDLKVLTPAREWGM-SREETIAYGERFGLPAPVSKKSPYSIDLNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_YEAST (Argininosuccinate synthase OS=Saccharomyces cerevisiae GN=ARG1 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.548e-48
Identity = 97/186 (52.15%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL +  G EVV F A+VGQ  ++ D  +EKA   GAC+ V  D +E+FVKD +FP ++  A+YE  YLLGTS+ARPVIAKA +DVA++ G  AV+HGCTGKGNDQ+RFEL+F+AL P++  + PWR  +      GR+D ++YA +  +PV  TK   +S D N  H+S+E  ILEDP
Sbjct:   14 LDTSVILAWLLDQ-GYEVVAFMANVGQE-EDFDAAKEKALKIGACKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQIDVAKQEGCFAVSHGCTGKGNDQIRFELSFYALKPDVKCITPWRMPEFFERFAGRKDLLDYAAQKGIPVAQTKAKPWSTDENQAHISYEAGILEDP 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_OCEIH (Argininosuccinate synthase OS=Oceanobacillus iheyensis GN=argG PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.548e-48
Identity = 96/182 (52.75%), Postives = 129/182 (70.88%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV V WL++ Y  +V+    DVG+G K+LD +++KA   GA +  V D K  F ++Y+ P L+A  +YE KY L ++++RP+I+K +VD+A E GA AVAHGCTGKGNDQVRF+++F ALNP L +VAP REW    RE+ IEYAK H +P+P+   S YS D+NLW  S+E  ILEDP
Sbjct:   14 LDTSVAVKWLQDKYNYDVIAVALDVGEG-KDLDFVKKKALDVGAIKSYVIDAKNLFAEEYVLPALQANLLYEGKYPLISALSRPLISKILVDIAEEEGAVAVAHGCTGKGNDQVRFDVSFTALNPNLKIVAPVREW-AMSREEEIEYAKSHGIPIPINLDSPYSIDQNLWGRSNECGILEDP 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_DANRE (Argininosuccinate synthase OS=Danio rerio GN=ass1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.548e-48
Identity = 95/186 (51.08%), Postives = 138/186 (74.19%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+ WL+E  G +V+ + A++GQ  ++ D   +KA+  GA ++ ++DL+ EFV+++I+P L+A A+YE +YLLGTS+ARP IA+  V +A+  GA  V+HG TGKGNDQVRFELT +AL P++ V+APWR  +     +GR+D +EYA+KHN+PVPVT K+ +S D NL H+S+E  ILE+P
Sbjct:   14 LDTSCILVWLKEQ-GYDVIAYLANIGQD-EDFDVARKKAEKLGAKKVFIEDLRSEFVQEFIWPALQANALYEDRYLLGTSIARPCIARRQVQIAQREGAQYVSHGATGKGNDQVRFELTCYALYPQVQVIAPWRIPEFYNRFRGRKDLMEYAEKHNIPVPVTPKAPWSMDANLMHISYESGILENP 197          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_CHLP86.947e-4952.46Argininosuccinate synthase OS=Chlorobaculum parvum... [more]
ASSY_XENLA9.073e-4950.00Argininosuccinate synthase OS=Xenopus laevis GN=as... [more]
ASSY_PROM09.073e-4954.64Argininosuccinate synthase OS=Prochlorococcus mari... [more]
ASSY_ANAVT9.073e-4953.01Argininosuccinate synthase OS=Anabaena variabilis ... [more]
ASSY_THESQ1.185e-4852.69Argininosuccinate synthase OS=Thermotoga sp. (stra... [more]
ASSY_THEP11.185e-4852.69Argininosuccinate synthase OS=Thermotoga petrophil... [more]
ASSY_SYNSC1.185e-4854.64Argininosuccinate synthase OS=Synechococcus sp. (s... [more]
ASSY_YEAST1.548e-4852.15Argininosuccinate synthase OS=Saccharomyces cerevi... [more]
ASSY_OCEIH1.548e-4852.75Argininosuccinate synthase OS=Oceanobacillus iheye... [more]
ASSY_DANRE1.548e-4851.08Argininosuccinate synthase OS=Danio rerio GN=ass1 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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