CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_RAT (Argininosuccinate synthase OS=Rattus norvegicus GN=Ass1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.227e-46
Identity = 89/186 (47.85%), Postives = 136/186 (73.12%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+ WL+E  G +V+ + A++GQ  ++ +   +KA   GA ++ ++D+ +EFV+++I+P +++ A+YE +YLLGTS+ARP IA+  V++A+  GA  V+HG TGKGNDQVRFELT ++L P++ V+APWR  +     +GR D +EYAK+H +P+PVT KS +S D NL H+S+E  ILE+P
Sbjct:   15 LDTSCILVWLKEQ-GYDVIAYLANIGQK-EDFEEARKKALKLGAKKVFIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELTCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKSPWSMDENLMHISYEAGILENP 198          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_MOUSE (Argininosuccinate synthase OS=Mus musculus GN=Ass1 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.227e-46
Identity = 89/186 (47.85%), Postives = 136/186 (73.12%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+ WL+E  G +V+ + A++GQ  ++ +   +KA   GA ++ ++D+ +EFV+++I+P +++ A+YE +YLLGTS+ARP IA+  V++A+  GA  V+HG TGKGNDQVRFELT ++L P++ V+APWR  +     +GR D +EYAK+H +P+PVT KS +S D NL H+S+E  ILE+P
Sbjct:   15 LDTSCILVWLKEQ-GYDVIAYLANIGQK-EDFEEARKKALKLGAKKVFIEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARRQVEIAQREGAKYVSHGATGKGNDQVRFELTCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKSPWSMDENLMHISYEAGILENP 198          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BREBN (Argininosuccinate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=argG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.227e-46
Identity = 88/182 (48.35%), Postives = 133/182 (73.08%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL++ Y  +V+    DVG+G K+LD +++KA   GA + +V D K+ F ++++ P L+A A+YE KY L ++++R +I++ +V++A + GA AVAHGCTGKGNDQVRF+++F ALNP++ +VAP REW    R++ IEYAKK+N+P+P+   + YS D+NLW  S E  +LEDP
Sbjct:   14 LDTSVAIKWLQDTYNYDVIAVALDVGEG-KDLDFVQKKALQVGALKSIVVDAKDAFAEEFVLPALKANAMYEGKYPLVSALSRYLISRVLVEIAEKEGAVAVAHGCTGKGNDQVRFDVSFTALNPDIKIVAPVREWG-WTRDEEIEYAKKNNIPIPIDLDNPYSIDQNLWGRSCECGVLEDP 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_TRIEI (Argininosuccinate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=argG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 90/183 (49.18%), Postives = 131/183 (71.58%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L+  +G  EV+   AD+GQG  EL+G+ +KA  SGA + +V D+ E  +K+Y FP ++A A+YE +Y L T++ARP+IAK +V+ A + GADA+AHGCTGKGNDQVRF++   ALNP++ ++AP REW +  RE+ I Y +++ +P PV K S YS D+NL  ++ E   LEDP
Sbjct:   15 VDTSVCIPYLKNEWGVKEVITLAADLGQG-DELEGVRKKALDSGAVESLVIDVIEPLIKEYAFPAIQANALYENRYPLATALARPLIAKILVEAAEKYGADAIAHGCTGKGNDQVRFDVAIAALNPQIKILAPAREWGM-SREETIAYGEEYGIPAPVKKSSPYSIDKNLLGMAIEAGELEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SYNP6 (Argininosuccinate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 95/183 (51.91%), Postives = 129/183 (70.49%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L++ +G E V+   AD+GQG  EL  + +KA  SGA + +V D   EFV+DY FP ++A ++YE +Y L T++ARP+IAK +V+ A + GADAVAHGCTGKGNDQVRF+++  ALNP+L V+AP REW +  RE+ I Y ++  +P PV K S YS DRNL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKQEWGVEEVITLAADLGQG-DELGPIRQKALDSGAVESLVIDATAEFVRDYAFPAIQANSLYEGRYPLSTALARPLIAKLLVEAAAKYGADAVAHGCTGKGNDQVRFDVSIAALNPDLKVLAPAREWGM-SREETIAYGERFGIPAPVKKSSPYSIDRNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SYNE7 (Argininosuccinate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=argG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 95/183 (51.91%), Postives = 129/183 (70.49%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L++ +G E V+   AD+GQG  EL  + +KA  SGA + +V D   EFV+DY FP ++A ++YE +Y L T++ARP+IAK +V+ A + GADAVAHGCTGKGNDQVRF+++  ALNP+L V+AP REW +  RE+ I Y ++  +P PV K S YS DRNL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKQEWGVEEVITLAADLGQG-DELGPIRQKALDSGAVESLVIDATAEFVRDYAFPAIQANSLYEGRYPLSTALARPLIAKLLVEAAAKYGADAVAHGCTGKGNDQVRFDVSIAALNPDLKVLAPAREWGM-SREETIAYGERFGIPAPVKKSSPYSIDRNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_GEOSW (Argininosuccinate synthase OS=Geobacillus sp. (strain WCH70) GN=argG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 98/182 (53.85%), Postives = 129/182 (70.88%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+E  G +V+    D+G+G K+LD ++EKA   GA +  V D+KEEF  +Y    L+A A+YE KY L ++++RP+IAK +V++A   GA AVAHGCTGKGNDQVRFE++  ALNP L V+AP REW    RE+ IEYAKKH +P+PV   S +S D+NLW  S+E  ILEDP
Sbjct:   14 LDTSVAIKWLQER-GYDVIACCLDLGEG-KDLDFVKEKALKVGAIKSYVIDVKEEFADEYALIALQAHALYEGKYPLVSALSRPLIAKKLVEIAELEGAVAVAHGCTGKGNDQVRFEVSIKALNPNLEVIAPVREWS-WSREEEIEYAKKHGIPIPVDLDSPFSIDQNLWGRSNECGILEDP 192          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BACHD (Argininosuccinate synthase OS=Bacillus halodurans GN=argG PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.214e-46
Identity = 92/182 (50.55%), Postives = 132/182 (72.53%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL +  G +V+    DVG+G K+L+ ++EKA   GA +    D K+EF ++++ P L+A A+YE+KY L ++++RP+I+K +V++A + GA AVAHGCTGKGNDQVRFE++  ALNP L V+AP REW    R++ IEYAKK+N+P+P+   + YS D+NLW  S+E  ILEDP
Sbjct:   14 LDTSVAIKWLSDK-GYDVIAVGLDVGEG-KDLEFVKEKALKVGAIESYTIDAKKEFAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAQAVAHGCTGKGNDQVRFEVSIQALNPNLEVLAPVREW-AWSRDEEIEYAKKNNIPIPIDLDNPYSVDQNLWGRSNECGILEDP 192          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PROMT (Argininosuccinate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=argG PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.504e-46
Identity = 92/183 (50.27%), Postives = 134/183 (73.22%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L+E YG E V+ F AD+GQG  ELD +++KA ++GA Q ++ +L + F++D+ FP +R+ A+Y+ +Y L T++ARP+IAK +V++ARE+ AD VAHGCTGKGNDQVRF++T  AL P+L ++ P REW +  RE+ I Y +K+ +  PV+KK+ YS D NL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKEEYGVEHVIAFAADLGQG-DELDEIKKKAISAGASQSLIGNLVKPFIEDFAFPAIRSNALYQGRYPLSTALARPLIAKKLVEIARELNADGVAHGCTGKGNDQVRFDVTIGALAPDLQLLTPAREWGM-SREETIAYGEKYGIVPPVSKKNPYSIDLNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_CYAP4 (Argininosuccinate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=argG PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.504e-46
Identity = 96/183 (52.46%), Postives = 127/183 (69.40%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L+  +G E V+   AD+GQG  EL+ + +KA  SGA   +V D K+ F+K+Y F  ++A A+YE +Y L T++ARP+IAK +VD A E GADAVAHGCTGKGNDQVRF+++  ALNP L V+AP REW +  RE  I Y +++ +P PV K S YS DRNL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKHEWGVEEVITLAADLGQG-DELEPIRQKALNSGAEISLVADAKDSFIKEYAFAAIQANALYENRYPLSTALARPLIAKLLVDAAAEYGADAVAHGCTGKGNDQVRFDVSIAALNPNLKVLAPAREWGM-SREQTIAYGERYGIPSPVKKSSPYSIDRNLLGRSIEAGPLEDP 195          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_RAT3.227e-4647.85Argininosuccinate synthase OS=Rattus norvegicus GN... [more]
ASSY_MOUSE3.227e-4647.85Argininosuccinate synthase OS=Mus musculus GN=Ass1... [more]
ASSY_BREBN3.227e-4648.35Argininosuccinate synthase OS=Brevibacillus brevis... [more]
ASSY_TRIEI4.214e-4649.18Argininosuccinate synthase OS=Trichodesmium erythr... [more]
ASSY_SYNP64.214e-4651.91Argininosuccinate synthase OS=Synechococcus sp. (s... [more]
ASSY_SYNE74.214e-4651.91Argininosuccinate synthase OS=Synechococcus elonga... [more]
ASSY_GEOSW4.214e-4653.85Argininosuccinate synthase OS=Geobacillus sp. (str... [more]
ASSY_BACHD4.214e-4650.55Argininosuccinate synthase OS=Bacillus halodurans ... [more]
ASSY_PROMT5.504e-4650.27Argininosuccinate synthase OS=Prochlorococcus mari... [more]
ASSY_CYAP45.504e-4652.46Argininosuccinate synthase OS=Cyanothece sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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