CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_CHICK (Argininosuccinate synthase OS=Gallus gallus GN=ASS1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.504e-46
Identity = 92/186 (49.46%), Postives = 134/186 (72.04%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+ WL+E  G  V+ F A++GQ  ++ D  ++KA A GA ++ ++D+  EFV+D+I+P +RA A+YE +Y+LG+++ARP IA+ +V +A+E GA  +AHG TGKGNDQVRFEL  +AL P + V+APWR  +      GR + +EYA+KH +PVPVT K+ +S D NL H+S+E  ILE+P
Sbjct:   16 LDTSCILVWLKEQ-GYTVIAFLANIGQ-TEDFDAAQKKALALGAKKVYIQDVCREFVEDFIWPAVRANALYEDRYMLGSALARPCIARHLVLIAQEEGARYIAHGATGKGNDQVRFELGCYALCPSIKVIAPWRMPEFYQRFPGRRELMEYAQKHGIPVPVTPKAPWSMDENLMHISYEAGILENP 199          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SYNS3 (Argininosuccinate synthase OS=Synechococcus sp. (strain CC9311) GN=argG PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.189e-46
Identity = 95/183 (51.91%), Postives = 132/183 (72.13%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L++ +G E V+ F AD+GQG  EL+ +  KA  +GA Q +V DL + F++++ FP +RA A+YE +Y L T++ARP+IA+ +V+VAREVGADAVAHGCTGKGNDQVRF++   +L P+L V+ P REW +  RE+ I Y ++  +P PV+KKS YS D NL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKQEWGVEEVITFAADLGQG-DELEPIRLKALEAGATQSLVGDLIKPFIEEFAFPAIRANALYEGRYPLSTALARPLIARRLVEVAREVGADAVAHGCTGKGNDQVRFDVAIASLAPDLKVLTPAREWGM-SREETIAYGERFGMPSPVSKKSPYSIDLNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PROM4 (Argininosuccinate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=argG PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.189e-46
Identity = 94/182 (51.65%), Postives = 129/182 (70.88%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            +DTS  +P+L   YG E VV F AD+GQG  EL+ + EKA ++GA + +V DL + F++D+ FP +RA A+YE KY L T++ARP+I+K +VD+A+E+ ADAVAHGCTGKGNDQVRF++    L PEL V+ P R+W +  RE+ I Y +++ +P PV+KKS YS D NL   S E   LED
Sbjct:   14 VDTSSCIPYLINEYGVEEVVAFAADLGQG-DELEPIREKALSAGASECLVDDLVKPFIEDFAFPAIRANALYEGKYPLSTALARPLISKRLVDIAKELEADAVAHGCTGKGNDQVRFDIAIATLAPELKVLTPARQWGM-SREEVIAYGERYGIPAPVSKKSPYSIDLNLLGRSVEAGPLED 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_DROME (Argininosuccinate synthase OS=Drosophila melanogaster GN=CG1315 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.189e-46
Identity = 91/186 (48.92%), Postives = 130/186 (69.89%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWD----IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS ++ WL +    EV+C  ADVGQ  ++    E+KA   GA +++V D+K+ FV+DYI+P ++ G +YE +YLLGTS+ARP I+ A+++VARE GA  +AHG TGKGNDQVRFEL  +AL P+L ++APWR+ +     QGR+D I YA++H + V     + +S D N+ H+S+E  ILEDP
Sbjct:   14 LDTSCVLKWLLDKQ-YEVICVLADVGQK-EDFTAAEKKALKIGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISVALMEVAREYGAKYLAHGATGKGNDQVRFELCAYALKPDLKIIAPWRDVEFCCQFQGRQDLIAYAQQHGIEVSAKPATPWSTDANILHISYESGILEDP 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PROM5 (Argininosuccinate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=argG PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.389e-46
Identity = 94/183 (51.37%), Postives = 129/183 (70.49%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L+  YG  EV+ F AD+GQG  +++ + +KA  SGA + V+ +L E+FV+ Y FP +RA A+Y  KY L T++ARP+IA+ +V +AR++ A AVAHGCTGKGNDQVRF+L   AL P+L ++ P REW +  RE+AI Y +K  +P PV+KKS YS D NL   S E   LEDP
Sbjct:   15 VDTSVCIPYLKNEYGISEVITFVADLGQG-DDIESISQKALNSGATKSVIGNLVEDFVEKYAFPAIRANALYGEKYPLSTALARPLIAENLVKLARKLNAGAVAHGCTGKGNDQVRFDLAINALGPDLEIITPAREWKM-SREEAILYGEKFGIPAPVSKKSPYSIDVNLLGRSVEAGFLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_STRTD (Argininosuccinate synthase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=argG PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 92/182 (50.55%), Postives = 128/182 (70.33%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+++Y    VC   DVG+G K+L+ + +KA   GA +  V D+K+EF +DY+ P L+A A YE+KY L ++++RP+IAK +V++A + GA  +AHGCTGKGNDQVRFE+   AL+P L VVAP REW    RE+ IEYAK + VPVP    + YS D+NLW  ++E  +LE+P
Sbjct:   14 LDTSVAITWLKKDYDVIAVCM--DVGEG-KDLEFIHDKALTVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWK-WSREEEIEYAKANGVPVPADLDNPYSVDQNLWGRANECGVLENP 191          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_STRT2 (Argininosuccinate synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=argG PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 92/182 (50.55%), Postives = 128/182 (70.33%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+++Y    VC   DVG+G K+L+ + +KA   GA +  V D+K+EF +DY+ P L+A A YE+KY L ++++RP+IAK +V++A + GA  +AHGCTGKGNDQVRFE+   AL+P L VVAP REW    RE+ IEYAK + VPVP    + YS D+NLW  ++E  +LE+P
Sbjct:   14 LDTSVAITWLKKDYDVIAVCM--DVGEG-KDLEFIHDKALTVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWK-WSREEEIEYAKANGVPVPADLDNPYSVDQNLWGRANECGVLENP 191          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_STRT1 (Argininosuccinate synthase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=argG PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 92/182 (50.55%), Postives = 128/182 (70.33%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+++Y    VC   DVG+G K+L+ + +KA   GA +  V D+K+EF +DY+ P L+A A YE+KY L ++++RP+IAK +V++A + GA  +AHGCTGKGNDQVRFE+   AL+P L VVAP REW    RE+ IEYAK + VPVP    + YS D+NLW  ++E  +LE+P
Sbjct:   14 LDTSVAITWLKKDYDVIAVCM--DVGEG-KDLEFIHDKALTVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWK-WSREEEIEYAKANGVPVPADLDNPYSVDQNLWGRANECGVLENP 191          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_THEEB (Argininosuccinate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=argG PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.601e-45
Identity = 93/183 (50.82%), Postives = 126/183 (68.85%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L+  +G  EV+    D+GQG  EL+ + +KA  +GA   +V D K EF+++Y FP ++A A+YE +Y L T++ARP+IAK +V+ A + GADAVAHGCTGKGNDQVRF++   ALNP L V+AP REW +  RE+ I Y ++  +P PV K S YS DRNL   S E   LEDP
Sbjct:   15 VDTSVCIPYLQHEWGVKEVITLAVDLGQG-DELEPIRQKALDAGASASLVADAKAEFIRNYAFPAIQANALYENRYPLSTALARPLIAKLLVEAATQYGADAVAHGCTGKGNDQVRFDVAIAALNPNLKVLAPAREWGM-SREETIAYGERFGIPAPVKKSSPYSIDRNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SYNJA (Argininosuccinate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=argG PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.601e-45
Identity = 93/182 (51.10%), Postives = 130/182 (71.43%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCE-VVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            +DTSV +P+L+  +G E VV    D+GQG  EL+ ++ KA  +GA Q +V++  +  + DY FP ++A A+YE++Y L T++ARP+IA+ +V+VA EVGADAVAHGCTGKGNDQVRF+L   ALNP+L V+AP REW +  RE+ I Y +++ +P+PV K S YS D N+   S E  ILED
Sbjct:   15 VDTSVCIPYLKHEWGVESVVTLAVDLGQGA-ELEAIQAKALRAGAEQSLVREAVQTLIADYAFPAIQANALYEQRYPLSTALARPLIAQLLVEVAEEVGADAVAHGCTGKGNDQVRFDLAIAALNPKLKVLAPAREWGMT-REETIAYGERYGIPMPVQKSSPYSIDLNILGRSVEAGILED 194          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_CHICK5.504e-4649.46Argininosuccinate synthase OS=Gallus gallus GN=ASS... [more]
ASSY_SYNS37.189e-4651.91Argininosuccinate synthase OS=Synechococcus sp. (s... [more]
ASSY_PROM47.189e-4651.65Argininosuccinate synthase OS=Prochlorococcus mari... [more]
ASSY_DROME7.189e-4648.92Argininosuccinate synthase OS=Drosophila melanogas... [more]
ASSY_PROM59.389e-4651.37Argininosuccinate synthase OS=Prochlorococcus mari... [more]
ASSY_STRTD1.226e-4550.55Argininosuccinate synthase OS=Streptococcus thermo... [more]
ASSY_STRT21.226e-4550.55Argininosuccinate synthase OS=Streptococcus thermo... [more]
ASSY_STRT11.226e-4550.55Argininosuccinate synthase OS=Streptococcus thermo... [more]
ASSY_THEEB1.601e-4550.82Argininosuccinate synthase OS=Thermosynechococcus ... [more]
ASSY_SYNJA1.601e-4551.10Argininosuccinate synthase OS=Synechococcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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