CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BACP2 (Argininosuccinate synthase OS=Bacillus pumilus (strain SAFR-032) GN=argG PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.020e-44
Identity = 95/182 (52.20%), Postives = 128/182 (70.33%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV V WL+E  G EVV    DVG+G K+L  +++KA   GA Q  + D KEEF +++    L+A  +YE KY L ++++RP+IAK +V+VA +  A AVAHGCTGKGNDQVRFE++  ALNP+L V+AP REW    R++ I+YA+KH +P+P+   S YS D+NLW  S+E  ILEDP
Sbjct:   15 LDTSVAVKWLQEQ-GYEVVACCLDVGEG-KDLAFVQQKALQVGAVQSYMIDAKEEFAEEFALTALQAHTMYEGKYPLVSALSRPLIAKKLVEVAEKENAVAVAHGCTGKGNDQVRFEVSIKALNPDLEVLAPVREWK-WSRDEEIDYAQKHGIPIPINLDSPYSIDQNLWGRSNECGILEDP 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SYNP2 (Argininosuccinate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=argG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44
Identity = 93/183 (50.82%), Postives = 127/183 (69.40%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            +DTSV +P+L   +G  EV+   AD+GQG +EL  +++KA  SGA   +V+D +EEF+ DY FP ++A A+YE +Y L T++ARP+IAK +V  A + GADAVAHGCT KGNDQVRF+L   A NPE+ V+AP REW +  RE+AI Y +++ +  PV K S +S D+NL   S E   LEDP
Sbjct:   15 VDTSVCIPYLMHEWGVKEVITLAADLGQG-EELGPIKQKALNSGAVVSLVEDGREEFITDYAFPAIKANALYENRYPLATALARPLIAKMLVRAAEKYGADAVAHGCTAKGNDQVRFDLGILAQNPEIKVLAPAREWGM-SREEAITYGEQYGLTFPVKKSSPFSIDKNLLGRSIEAGPLEDP 195          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_LACS1 (Argininosuccinate synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=argG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44
Identity = 92/184 (50.00%), Postives = 128/184 (69.57%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWRE--WDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+ N G +V+    DVG+G K+L+ ++EK    GA + +V D K EF ++Y+ P L+  A YE KY L ++++RP+I K +V+VA+E GA A+AHGCTGKGNDQVRFE+   AL PE+ +  P R+  W    RE+ IEYAK++ +PVP++KKS YS D NLW  ++E  ILEDP
Sbjct:   14 LDTSVEIAWLK-NKGYDVIACCIDVGEG-KDLEAIKEKGLKVGAVESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGATAIAHGCTGKGNDQVRFEVGIHALVPEMKIEDPIRDLHW---SREEEIEYAKENGIPVPISKKSPYSIDENLWGRANECGILEDP 192          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_IGNH4 (Argininosuccinate synthase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=argG PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44
Identity = 93/182 (51.10%), Postives = 122/182 (67.03%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV V WL+E +G EV+  T DVGQ  ++   +EE+A  +GA +  + D KEEFV  YI P + A A+YE  Y LGT++ARP+I + +++VAR+ GADAVAHG T KGNDQVRFE  F AL PE+ ++AP R W +  R++  E+AKK  +P+    K  YS D NLW  S EG  LEDP
Sbjct:   12 LDTSVAVAWLKEKFGAEVITVTVDVGQK-EDFKEIEERAYKAGASKHYLIDAKEEFVNKYIKPAIIANALYEEVYPLGTALARPLIGEKVIEVARKEGADAVAHGATSKGNDQVRFEAAFKALAPEIKIIAPIRMWGM-NRKEEYEFAKKKGIPISAESKK-YSIDENLWSRSIEGGELEDP 190          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_LISMO (Argininosuccinate synthase OS=Listeria monocytogenes GN=argG PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.788e-44
Identity = 93/182 (51.10%), Postives = 127/182 (69.78%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL E+ G EV+    DVG+G K LD ++EKA   GA +    D KEEF +D+    L+A A YE KY L ++++RP+IAK +V+VAR+ GA A+AHGCTGKGNDQVRFE+   AL P+L VV+P R+W    RE+ I YAK+H++PVP+   + +S D+NLW  S+E  +LE+P
Sbjct:   14 LDTSVAIQWLVES-GYEVIACCLDVGEG-KNLDFIKEKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVRDWK-WSREEEINYAKEHDIPVPIDLDNPFSIDQNLWGRSNECGVLENP 192          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BACLD (Argininosuccinate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=argG PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.148e-43
Identity = 92/182 (50.55%), Postives = 126/182 (69.23%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+E  G +VV    DVG+G K+L  +++KA   GA    V D KEEF K++    L+A  +YE KY L ++++RP+IAK +V+VA +  A AVAHGCTGKGNDQVRFE++  +LNP+L V+AP REW    R++ I YA+KH +P+P+   S YS D+NLW  S+E  +LEDP
Sbjct:   15 LDTSVAIKWLQEQ-GYDVVACCLDVGEG-KDLAFVQQKALQVGASNSYVIDAKEEFAKEFALTALQAHTLYEGKYPLVSALSRPLIAKKLVEVAEKENAQAVAHGCTGKGNDQVRFEVSIKSLNPDLEVLAPVREWK-WSRDEEIAYAEKHGIPIPINLDSPYSIDQNLWGRSNECGVLEDP 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_STRSY (Argininosuccinate synthase OS=Streptococcus suis (strain 05ZYH33) GN=argG PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 90/182 (49.45%), Postives = 128/182 (70.33%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+++Y    VC   DVG+G K L+ + +KA + GA +  V D+KEEF ++Y+ P L+A A YE+KY L ++++RP+I+K +V++A + GA  +AHGCTGKGNDQVRFE+   AL+P L VVAP REW    RE+ I +AK++ VPVP    S YS D+NLW  ++E  +LE+P
Sbjct:   14 LDTSVAIAWLKKDYDVIAVCM--DVGEG-KNLEFIHDKALSIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWK-WAREEEIIFAKENGVPVPADLDSPYSVDQNLWGRANECGVLENP 191          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_STRS2 (Argininosuccinate synthase OS=Streptococcus suis (strain 98HAH33) GN=argG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 90/182 (49.45%), Postives = 128/182 (70.33%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + WL+++Y    VC   DVG+G K L+ + +KA + GA +  V D+KEEF ++Y+ P L+A A YE+KY L ++++RP+I+K +V++A + GA  +AHGCTGKGNDQVRFE+   AL+P L VVAP REW    RE+ I +AK++ VPVP    S YS D+NLW  ++E  +LE+P
Sbjct:   14 LDTSVAIAWLKKDYDVIAVCM--DVGEG-KNLEFIHDKALSIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWK-WAREEEIIFAKENGVPVPADLDSPYSVDQNLWGRANECGVLENP 191          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_RUBXD (Argininosuccinate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=argG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 92/182 (50.55%), Postives = 124/182 (68.13%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSV + W  E  G E      D+GQG +  + + EKA   GA ++ V D +EEF +DY+ P ++A A+Y  +Y L T++ RP+IAK +V+ AR VGA  +AHG TGKGNDQVRF++T  +L P+L VVAP R+W++  R + IEYA+KH +PVPVTK+S YS D+NLW  S E   LEDP
Sbjct:   15 LDTSVCLKWFEEQ-GAEPYALYLDLGQG-EPAEDVREKALRIGAREVFVWDAREEFARDYVAPAIKANALYGGRYPLFTALGRPLIAKKLVEAARRVGATHIAHGSTGKGNDQVRFDVTTGSLAPDLTVVAPVRDWNM-NRPEEIEYARKHGIPVPVTKESPYSVDQNLWGRSIEAGPLEDP 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BURPS (Argininosuccinate synthase OS=Burkholderia pseudomallei GN=argG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.499e-43
Identity = 81/180 (45.00%), Postives = 121/180 (67.22%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + +L+ ++ C V  + A++GQ  ++ + ++ +A  +GA +LV++DL+E F+ D++FP L+A A YER YLLGT +ARP I K +++ AR+   D ++HGCT KGNDQVRFE+    L P+L  VAPWR W +Q RED   Y ++H +PV     ++ S D NL H++ EGD LE
Sbjct:   14 LDTSTALHFLKRHFDCRVTAYCANLGQK-EDWERMKRRAAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLARPAIVKGLIEYARKHDVDCLSHGCTQKGNDQVRFEMAAKILAPDLPTVAPWRIWSLQSREDLFAYCQQHGIPVESRPDNLLSHDENLVHITTEGDYLE 192          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_BACP23.020e-4452.20Argininosuccinate synthase OS=Bacillus pumilus (st... [more]
ASSY_SYNP25.152e-4450.82Argininosuccinate synthase OS=Synechococcus sp. (s... [more]
ASSY_LACS15.152e-4450.00Argininosuccinate synthase OS=Lactobacillus saliva... [more]
ASSY_IGNH45.152e-4451.10Argininosuccinate synthase OS=Ignicoccus hospitali... [more]
ASSY_LISMO8.788e-4451.10Argininosuccinate synthase OS=Listeria monocytogen... [more]
ASSY_BACLD1.148e-4350.55Argininosuccinate synthase OS=Bacillus licheniform... [more]
ASSY_STRSY1.499e-4349.45Argininosuccinate synthase OS=Streptococcus suis (... [more]
ASSY_STRS21.499e-4349.45Argininosuccinate synthase OS=Streptococcus suis (... [more]
ASSY_RUBXD1.499e-4350.55Argininosuccinate synthase OS=Rubrobacter xylanoph... [more]
ASSY_BURPS1.499e-4345.00Argininosuccinate synthase OS=Burkholderia pseudom... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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