CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11611 contig Csv1_Contig11611:422..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_RHOPB (Argininosuccinate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=argG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 53/189 (28.04%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+++  G  V  +TA++GQ  + + D +  KA   GA +  + D + + V + I   +++GA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP+L +  PW +     ++ GR +   +   H     ++ +  YS D NL   +HE   LE
Sbjct:   22 LDTSAALLWMKQK-GARVFAYTANLGQPDEADYDEIPRKAMEFGAEKARLVDCRSQLVHEGI-AAIQSGAFHVSTGGVAYFNTTPLGRAVTGTMLVSAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPDLRIYKPWLDQQFIDELGGRAEMSAFMTAHGFAYKMSSEKAYSTDSNLLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_OLICO (Argininosuccinate synthase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=argG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 53/189 (28.04%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+++  G  V  +TA++GQ  + + D +  KA   GA +  + D + + V + I   +++GA +       Y   T + R V    +V   +E G +    G T KGND  RF       NPEL +  PW +     ++ GR +   +   H     ++ +  YS D N+   +HE   LE
Sbjct:   22 LDTSAALLWMKQK-GARVFAYTANLGQPDEADYDEIPRKALEFGAEKARLVDCRTQLVHEGI-AAIQSGAFHVSTGGIAYFNTTPLGRAVTGTMLVSAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPELRIYKPWLDQQFIDELGGRAEMSAFMTAHGFAYKMSAEKAYSTDSNILGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_SOLUE (Argininosuccinate synthase OS=Solibacter usitatus (strain Ellin6076) GN=argG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 54/189 (28.57%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+R   G     +TA++GQ  + + D +  +A   GA +  + D +++ V + I   L++GA +       Y   T + R V    +V   +E        G T KGND  RF       NP L +  PW +     ++ GR++  EY   H +   ++ +  YS D N+W  +HE   LE
Sbjct:   22 LDTSAAIHWMRAK-GAIPYSYTANLGQPDEPDYDEIPRRALLYGAEKARLIDCRKQLVAEGI-AALQSGAFHISTAGVHYFNTTPIGRAVTGTMLVIAMKEDDVHIWGDGSTFKGNDIERFYRYGLLANPALRIYKPWLDQTFIDELGGRKEMSEYMISHGLTYKMSVEKAYSTDSNIWGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BORPD (Argininosuccinate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=argG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 55/189 (29.10%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIKE-LDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+R N G     +TA++GQ  ++  D +  +A   GA    + D + + V + I   L+AGA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP+L +  PW +     ++ GR +  EY ++      ++ +  YS D N+   +HE   LE
Sbjct:   22 LDTSAALLWMR-NKGAIPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AALQAGAFHVSTAGITYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPDLKIYKPWLDQLFIDELGGRAEMSEYMRQAGFDYKMSAEKAYSTDSNMLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_RHOP5 (Argininosuccinate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=argG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 53/189 (28.04%), Postives = 86/189 (45.50%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+++  G  V  +TA++GQ  + + D +  KA   GA +  + D + + V + I   ++AGA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP+L +  PW +     ++ GR +   +         ++ +  YS D NL   +HE   LE
Sbjct:   22 LDTSAALLWMKQK-GARVFAYTANLGQPDEADYDEIPRKAMEFGAEKARLVDCRSQLVHEGI-AAIQAGAFHVSTGGIAYFNTTPLGRAVTGTMLVSAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPDLRIYKPWLDQQFIDELGGRAEMSAFMTAAGFAYKMSSEKAYSTDSNLLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BORPE (Argininosuccinate synthase OS=Bordetella pertussis GN=argG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 54/189 (28.57%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+R+  G     +TA++GQ  + + D +  +A   GA    + D + + V + I   L+AGA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP+L +  PW +     ++ GR +  EY ++      ++ +  YS D N+   +HE   LE
Sbjct:   22 LDTSAALLWMRQK-GAVPYAYTANLGQPDEPDYDEIPRRAMQYGAEAARLVDCRAQLVAEGI-AALQAGAFHISTAGLTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTFKGNDIERFYRYGLLTNPDLKIYKPWLDQTFIDELGGRAEMSEYMRQAGFDYKMSAEKAYSTDSNMLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BORPA (Argininosuccinate synthase OS=Bordetella parapertussis GN=argG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 54/189 (28.57%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+R+  G     +TA++GQ  + + D +  +A   GA    + D + + V + I   L+AGA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP+L +  PW +     ++ GR +  EY ++      ++ +  YS D N+   +HE   LE
Sbjct:   22 LDTSAALLWMRQK-GAVPYAYTANLGQPDEPDYDEIPRRAMQYGAEAARLVDCRAQLVAEGI-AALQAGAFHISTAGLTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTFKGNDIERFYRYGLLTNPDLKIYKPWLDQTFIDELGGRAEMSEYMRQAGFDYKMSAEKAYSTDSNMLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BORBR (Argininosuccinate synthase OS=Bordetella bronchiseptica GN=argG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 54/189 (28.57%), Postives = 87/189 (46.03%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERK----YLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+R+  G     +TA++GQ  + + D +  +A   GA    + D + + V + I   L+AGA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP+L +  PW +     ++ GR +  EY ++      ++ +  YS D N+   +HE   LE
Sbjct:   22 LDTSAALLWMRQK-GAVPYAYTANLGQPDEPDYDEIPRRAMQYGAEAARLVDCRAQLVAEGI-AALQAGAFHISTAGLTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTFKGNDIERFYRYGLLTNPDLKIYKPWLDQTFIDELGGRAEMSEYMRQAGFDYKMSAEKAYSTDSNMLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BRASO (Argininosuccinate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=argG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 52/189 (27.51%), Postives = 86/189 (45.50%), Query Frame = -1
Query:   38 LDTSVIVPWLRENYGCEVVCFTADVGQGIK-ELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIY----ERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREW----DIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILE 577
            LDTS  + W+++  G     +TA++GQ  + + D +  KA + GA +  + D + + V + I   +++GA +       Y   T + R V    +V   +E G +    G T KGND  RF       NP L +  PW +     ++ GR +   +   H     ++ +  YS D NL   +HE   LE
Sbjct:   22 LDTSAALLWMKQK-GARCFAYTANLGQPDESDYDEIPRKAMSFGAEKARLVDCRTQLVHEGI-AAIQSGAFHISTGGATYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPNLKIYKPWLDQQFIDELGGRAEMSAFLTAHGFNYKMSAEKAYSTDSNLLGATHEAKDLE 208          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_XYLFT (Argininosuccinate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=argG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 57/183 (31.15%), Postives = 90/183 (49.18%), Query Frame = -1
Query:   50 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKD----LKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAI---EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEG 577
            LDTS  +P+L+E        F    G    E D +E++A   G    +  D    + + FVK  ++    AG  Y+ +Y L  S  R +I  A++  A  +G  AVAHGCTG GNDQVRF+L   A   +  ++AP RE   +  +  +   +Y ++    V   +K+ Y+ + NL  ++  G
Sbjct:   14 LDTSFCIPYLKEQGYAVHTVFADTGGVDEDERDFIEKRAAELGVASHLTVDGGPAIWDGFVKQLVW----AGEAYQGQYPLLVS-DRYLIVDAVLQRADALGTCAVAHGCTGMGNDQVRFDLAIKA-QGDYTIIAPIREIQKEHTQTRLYEQKYLEERGFGVRAKQKN-YTINENLLGITLSG 189          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_RHOPB1.787e-1228.04Argininosuccinate synthase OS=Rhodopseudomonas pal... [more]
ASSY_OLICO3.048e-1228.04Argininosuccinate synthase OS=Oligotropha carboxid... [more]
ASSY_SOLUE5.200e-1228.57Argininosuccinate synthase OS=Solibacter usitatus ... [more]
ASSY_BORPD5.200e-1229.10Argininosuccinate synthase OS=Bordetella petrii (s... [more]
ASSY_RHOP51.158e-1128.04Argininosuccinate synthase OS=Rhodopseudomonas pal... [more]
ASSY_BORPE1.513e-1128.57Argininosuccinate synthase OS=Bordetella pertussis... [more]
ASSY_BORPA1.513e-1128.57Argininosuccinate synthase OS=Bordetella parapertu... [more]
ASSY_BORBR1.513e-1128.57Argininosuccinate synthase OS=Bordetella bronchise... [more]
ASSY_BRASO2.581e-1127.51Argininosuccinate synthase OS=Bradyrhizobium sp. (... [more]
ASSY_XYLFT4.402e-1131.15Argininosuccinate synthase OS=Xylella fastidiosa (... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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