CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11611 contig Csv1_Contig11611:422..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BUCAI (Argininosuccinate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=argG PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.324e-59
Identity = 101/182 (55.49%), Postives = 137/182 (75.27%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+ENY  EVV F AD+GQ  K+L+G+E+K+  SGA    V DLKEEF+++Y++P L+ GA+YE  YLLGT+MARP+IAK  V++A  +GA+++ HG TGKGNDQVRFE+ + AL P LNV+APWREW++  RE  ++Y  K N+    T + IYS+D N WH+S EG +LE+P
Sbjct:   17 LDTSAIIPWLKENYNFEVVAFVADIGQSKKDLNGIEKKSLESGASSCHVFDLKEEFIENYVYPVLKTGALYEGSYLLGTAMARPIIAKKQVELALNIGANSLCHGATGKGNDQVRFEMAYAALAPNLNVIAPWREWNLNSRESLLKYLDKKNISTTATLEKIYSKDENSWHISTEGGLLENP 198          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_BUCA5 (Argininosuccinate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=argG PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.324e-59
Identity = 101/182 (55.49%), Postives = 137/182 (75.27%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS I+PWL+ENY  EVV F AD+GQ  K+L+G+E+K+  SGA    V DLKEEF+++Y++P L+ GA+YE  YLLGT+MARP+IAK  V++A  +GA+++ HG TGKGNDQVRFE+ + AL P LNV+APWREW++  RE  ++Y  K N+    T + IYS+D N WH+S EG +LE+P
Sbjct:   17 LDTSAIIPWLKENYNFEVVAFVADIGQSKKDLNGIEKKSLESGASSCHVFDLKEEFIENYVYPVLKTGALYEGSYLLGTAMARPIIAKKQVELALNIGANSLCHGATGKGNDQVRFEMAYAALAPNLNVIAPWREWNLNSRESLLKYLDKKNISTTATLEKIYSKDENSWHISTEGGLLENP 198          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_GEOSF (Argininosuccinate synthase OS=Geobacter sp. (strain FRC-32) GN=argG PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.341e-59
Identity = 105/181 (58.01%), Postives = 141/181 (77.90%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTS+I+ WL+  YGCEV+ F+AD+GQG  EL  + EKA A+GA ++ + DLKEEFV+D+++P  RA AIYE  YLLGTS+ARP+IAK  +++A+  GADAV+HG TGKGNDQVRFEL ++  NP + V+APWR+W +  R+  + YAKK+++P+PVTKK  +S DRNL H+S EG ILED
Sbjct:   17 LDTSIILKWLKNEYGCEVITFSADLGQG-DELAPIREKAFATGADKVYIDDLKEEFVRDFVYPMFRANAIYEGHYLLGTSIARPLIAKRQMEIAKIEGADAVSHGATGKGNDQVRFELGYYHFNPAITVIAPWRDWKLNSRQALVNYAKKNDIPIPVTKKRPWSSDRNLLHISFEGAILED 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PARL1 (Argininosuccinate synthase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=argG PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.670e-59
Identity = 106/184 (57.61%), Postives = 142/184 (77.17%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKK--SIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL+E YGCEVV FTAD+GQG +EL+   +KA+  G  ++ ++DL+EEFV+D++FP  RA A+YE  YLLGTS+ARP+IAK  +++AR+ GADAV HG TGKGNDQVRFEL + ALNPE+ ++APWREWD+  R   IE+A+KH +P+   K+  + +S D NL H+S EG +LEDP
Sbjct:   19 LDTSVILKWLQETYGCEVVTFTADLGQG-EELEPARKKAEMLGVKEIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLIAKRQIEIARQTGADAVCHGSTGKGNDQVRFELGYAALNPEIKIIAPWREWDLTSRTKLIEFAEKHQIPIAKDKRGEAPFSVDANLLHISAEGKVLEDP 201          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_GEOUR (Argininosuccinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=argG PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.670e-59
Identity = 105/181 (58.01%), Postives = 141/181 (77.90%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTS+I+ WL+  YGCEV+ F+AD+GQG  EL  + +KA A+GA ++ + DL+EEFV+D++FP  RA AIYE  YLLGTS+ARP+IAK  +++A+  GADAV+HG TGKGNDQVRFEL ++  NP + V+APWR+W +  R+  I YAKK+++P+PVTKK  +S DRNL H+S EG ILED
Sbjct:   17 LDTSIILKWLKNEYGCEVITFSADLGQG-DELTPIRDKAFATGADKVYIDDLREEFVRDFVFPMFRANAIYEGHYLLGTSIARPLIAKRQMEIAKIEGADAVSHGATGKGNDQVRFELGYYHFNPAITVIAPWRDWKLNSRQALINYAKKNDIPIPVTKKRPWSSDRNLLHISFEGAILED 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_MARAV (Argininosuccinate synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=argG PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.405e-59
Identity = 107/183 (58.47%), Postives = 141/183 (77.05%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTK-KSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVIV WL++ Y CEVV FTAD+GQG +E++    KA+A G  ++ ++DL+EEFV+DY+FP  RA  IYE +YLLGTS+ARP+IAK ++D+A E GADA++HG TGKGNDQVRFEL  +AL P + V+APWREWD+  RE  ++Y ++ N+PV + K KS YS D NL H+S+EG  LEDP
Sbjct:   15 LDTSVIVRWLQDTYNCEVVTFTADIGQG-EEVEPARAKAEALGVKEIYIEDLREEFVRDYVFPMFRANTIYEGEYLLGTSIARPLIAKRLIDIANETGADAISHGATGKGNDQVRFELGAYALKPGVKVIAPWREWDLNSREKLLKYCEERNIPVEMKKGKSPYSMDANLLHISYEGINLEDP 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_GEOSM (Argininosuccinate synthase OS=Geobacter sp. (strain M21) GN=argG PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.405e-59
Identity = 105/181 (58.01%), Postives = 140/181 (77.35%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTS+I+ WL+  YGCEVV F+AD+GQG  EL+ + EKA  +GA ++ + DL+EEFV+D++FP  RA AIYE  YLLGTS+ARP+IAK  +++A+  G DAV+HG TGKGNDQVRFEL ++  NP + VVAPWREW +  R+  I YAK++++P+P+TKK  +S DRNL H+S EG ILED
Sbjct:   17 LDTSIILKWLKNEYGCEVVTFSADLGQG-DELEPVREKAFKTGADKVYIDDLREEFVRDFVFPMFRANAIYEGSYLLGTSIARPLIAKRQMEIAQIEGCDAVSHGATGKGNDQVRFELAYYHFNPGITVVAPWREWKLNSRQALINYAKRNDIPIPITKKRPWSSDRNLLHISFEGGILED 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_GEOMG (Argininosuccinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=argG PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.263e-58
Identity = 104/181 (57.46%), Postives = 139/181 (76.80%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTS+I+ WL+  YGCEV+ F+AD+GQG  EL  + +KA A+GA ++ + DLKEEFV+D++FP  RA AIYE  YLLGTS+ARP+IAK  +++A+  GADAV+HG TGKGNDQVRFEL ++  +P + VV PWREW +  R+  + YAKK+ +P+PVTKK  +S DRN+ H+S EG ILED
Sbjct:   19 LDTSIILKWLKNEYGCEVIAFSADLGQG-DELAPIRDKAFATGADKVYIDDLKEEFVRDFVFPMFRANAIYEGHYLLGTSIARPLIAKRQMEIAKIEGADAVSHGATGKGNDQVRFELAYYHFDPAITVVVPWREWKLNSRQALVNYAKKNGIPIPVTKKRPWSSDRNMLHISFEGGILED 198          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_GEOBB (Argininosuccinate synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=argG PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.263e-58
Identity = 104/181 (57.46%), Postives = 140/181 (77.35%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTS+I+ WL+  YGCEVV F+AD+GQG  EL+ + EKA  +GA ++ + DL+EEFV+D+++P  RA AIYE  YLLGTS+ARP+IAK  +++A+  G DAV+HG TGKGNDQVRFEL ++  NP + VVAPWREW +  R+  I YAK++++P+P+TKK  +S DRNL H+S EG ILED
Sbjct:   17 LDTSIILKWLKNEYGCEVVTFSADLGQG-DELEPVREKAFKTGADKVYIDDLREEFVRDFVYPMFRANAIYEGSYLLGTSIARPLIAKRQMEIAKIEGCDAVSHGATGKGNDQVRFELAYYHFNPGITVVAPWREWKLNSRQALINYAKRNDIPIPITKKRPWSSDRNLLHISFEGGILED 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_EUBR3 (Argininosuccinate synthase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=argG PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.263e-58
Identity = 106/184 (57.61%), Postives = 139/184 (75.54%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWRE--WDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDT+ I+PWL+E Y  +V+C   + GQG +ELDGL+E+AK SGA +L ++D+ +EF +DYI PC++AGA+YE KYLLGT+MARP IAK +V++AR+ GA A+ HG TGKGNDQ+RFEL   AL P++ V+APWR+  W +  RE  IEY K H + +P    S YSRDRNLWH+SHEG  LEDP
Sbjct:   13 LDTTAIIPWLKETYDYDVICCCINCGQG-EELDGLDERAKLSGASKLYIEDICDEFSEDYIVPCVQAGAVYEHKYLLGTAMARPGIAKKLVEIARKEGAVAICHGATGKGNDQIRFELGIKALAPDIKVIAPWRQDNWKMDSREAEIEYCKAHGIDLPFGTDSSYSRDRNLWHISHEGLELEDP 195          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_BUCAI3.324e-5955.49Argininosuccinate synthase OS=Buchnera aphidicola ... [more]
ASSY_BUCA53.324e-5955.49Argininosuccinate synthase OS=Buchnera aphidicola ... [more]
ASSY_GEOSF4.341e-5958.01Argininosuccinate synthase OS=Geobacter sp. (strai... [more]
ASSY_PARL15.670e-5957.61Argininosuccinate synthase OS=Parvibaculum lavamen... [more]
ASSY_GEOUR5.670e-5958.01Argininosuccinate synthase OS=Geobacter uraniiredu... [more]
ASSY_MARAV7.405e-5958.47Argininosuccinate synthase OS=Marinobacter aquaeol... [more]
ASSY_GEOSM7.405e-5958.01Argininosuccinate synthase OS=Geobacter sp. (strai... [more]
ASSY_GEOMG1.263e-5857.46Argininosuccinate synthase OS=Geobacter metallired... [more]
ASSY_GEOBB1.263e-5857.46Argininosuccinate synthase OS=Geobacter bemidjiens... [more]
ASSY_EUBR31.263e-5857.61Argininosuccinate synthase OS=Eubacterium rectale ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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