CB304763

Overview
NameCB304763
Unique NameCB304763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.779e-52
Identity = 90/124 (72.58%), Postives = 114/124 (91.94%), Query Frame = -1
Query:  271 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 642
            VE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+RI +AR+ LHRM+NE+EL+ A++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYEG DWL+ ++ N
Sbjct:   56 VEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = -1
Query:  268 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 642
            VEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+ AVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   56 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.418e-52
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = -1
Query:  268 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 642
            VEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+ AVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   56 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.391e-46
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.391e-46
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.391e-46
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.391e-46
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GLYEGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 3.098e-46
Identity = 82/121 (67.77%), Postives = 101/121 (83.47%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CAT+G+GLYEGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CA SG+GLYEGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 86/125 (68.80%), Postives = 103/125 (82.40%), Query Frame = -1
Query:  268 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 642
            VEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL GA +LVFANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+WLS  I NK
Sbjct:   56 VEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
The following BLAST results are available for this feature:
BLAST of CB304763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ARF1_PLAFO3.779e-5272.58ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF4_RAT8.418e-5276.80ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE8.418e-5276.80ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF6_RAT1.391e-4668.60ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG1.391e-4668.60ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE1.391e-4668.60ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN1.391e-4668.60ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK3.098e-4667.77ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF6_XENLA5.285e-4667.77ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF4_ARATH5.285e-4668.80Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304763 ID=CB304763; Name=CB304763; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGGTGCACCAAATTAGTT
TAAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCC
AACCAACAATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAA
ACAACACAACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAA
AAATAGATAATACTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGA
TCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAG
ACCTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACC
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCACCTCGCAGCTCGTCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTCTTATATTCAAC
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