CB304763

Overview
NameCB304763
Unique NameCB304763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:251..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 6.902e-46
Identity = 85/127 (66.93%), Postives = 105/127 (82.68%), Query Frame = -1
Query:  268 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 642
            VEYKNI+FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D +  RI +A++ELH +L EDELR A LLVFANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLDWLS+ I +K
Sbjct:   56 VEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 3.426e-45
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+R A++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL EGL WL++N
Sbjct:   52 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.119e-41
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = -1
Query:  280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 642
            V YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +RI EAR ELHR++++ E+R  +LLV ANKQDLP A++ A+ITD L L  L+ R W +Q TCA +G+GL EGL WLS N
Sbjct:   60 VTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.318e-40
Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = -1
Query:  277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 642
            V+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L EDEL+GAV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   56 VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 9.654e-40
Identity = 73/122 (59.84%), Postives = 93/122 (76.23%), Query Frame = -1
Query:  277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 642
            V+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L E+EL+GAV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   56 VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.809e-39
Identity = 69/125 (55.20%), Postives = 96/125 (76.80%), Query Frame = -1
Query:  268 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 642
            +EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+G  +LVFANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   64 IEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.106e-38
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = -1
Query:  277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 642
            VEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELR A+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  443 VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.106e-38
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = -1
Query:  277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 642
            VEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELR A+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  443 VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.013e-37
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = -1
Query:  268 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 642
            + YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+G  +LV ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   64 IVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CB304763 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.629e-37
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = -1
Query:  277 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRGAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 642
            VEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELR A+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  423 VEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545          
The following BLAST results are available for this feature:
BLAST of CB304763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ARF_GIALA6.902e-4666.93ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF3_DROME3.426e-4567.77ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF2_SCHPO5.119e-4165.29Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH3.318e-4060.66ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP9.654e-4059.84ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFJ_DICDI2.809e-3955.20ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARD1_MOUSE3.106e-3860.98GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN3.106e-3860.98GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFK_DICDI2.013e-3753.60ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARD1_RAT2.629e-3760.16GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304763 ID=CB304763; Name=CB304763; organism=Citrus sinensis; type=EST; length=642bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGGTGCACCAAATTAGTT
TAAATTACAGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCC
AACCAACAATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAA
ACAACACAACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAA
AAATAGATAATACTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGA
TCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAG
ACCTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACC
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCACCTCGCAGCTCGTCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTCTTATATTCAAC
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