CB304764

Overview
NameCB304764
Unique NameCB304764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 416
            VV+DF A+WCGPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  GA  + L+  I  ++
Sbjct:   23 VVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  153 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 416
            ++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPTF+F K  + VD V GA +  +  TI KH ++  A
Sbjct:   25 IIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  174 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 416
            V VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ GA KE+L+  IA+
Sbjct:  471 VAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPTF+FLK+G  +DK+VGA  +E+++ +
Sbjct:   27 IVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 416
            VV+DF A WCGPC+ IAP L ELA +  + V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L + + KH
Sbjct:   23 VVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++GA    L++ I
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 416
            VVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VGA   +L+ +I  +L
Sbjct:   21 VVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 416
            V++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  165 VVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 416
            +++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L+  + K LA
Sbjct:   21 IIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  153 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 416
            +++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ + + I +H +   A
Sbjct:   25 IIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
The following BLAST results are available for this feature:
BLAST of CB304764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIO2_DROYA1.310e-1545.24Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
NGLY1_CAEBR1.310e-1540.91Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXND2_HUMAN1.711e-1546.91Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRXL4_ARATH1.711e-1549.37Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIOT_DROME2.918e-1544.58Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
TRX3_YEAST3.811e-1543.04Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
TRX1_SCHPO4.977e-1542.17Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_CHLTR4.977e-1544.58Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIO_COPCM1.109e-1439.53Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
NGLY1_CAEEL1.448e-1437.50Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304764 ID=CB304764; Name=CB304764; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAACACACAAACAAACA
CAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGCATATATT
GAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTATAACTTAT
TAGGCAGAAGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCAGTTCCTC
TTTCTTTGCTCCAACCACCTTGTCCACAATCTTCCCCTCTTTCAGGAACA
TGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACTCTTCAGT
TCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCTTGGCCAG
CTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCATGAAGCAG
TGAAATCAACAACAACCCC
back to top