CB304764

Overview
NameCB304764
Unique NameCB304764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            +V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +  +++ I
Sbjct:   25 LVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 416
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V GAK ++L   I
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 176          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  171 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 416
            V++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  171 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 413
            VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT +  ++G+ +D++VGA  + L   +AK+
Sbjct:   39 VVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  225 VVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 416
            VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   24 VVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 416
            V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   88 VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            VV+D    WCGPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V GAK E+L   I
Sbjct:  100 VVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  165 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 416
            V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   95 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = -1
Query:  159 VVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELQQTIAKHLATA 416
            VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:   21 VVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
The following BLAST results are available for this feature:
BLAST of CB304764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
THIO_ECHGR2.091e-1344.30Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIOM_BOVIN2.091e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_PEA2.731e-1345.00Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
THIO_CHLCV6.084e-1340.96Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRX2_SCHPO1.038e-1237.04Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_NEUCR1.038e-1253.73Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
TRXM_PEA1.770e-1241.18Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXF2_ARATH1.770e-1242.50Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_SPIOL2.312e-1239.53Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_FUSCU3.020e-1242.57Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304764 ID=CB304764; Name=CB304764; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAACACACAAACAAACA
CAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGCATATATT
GAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTATAACTTAT
TAGGCAGAAGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCAGTTCCTC
TTTCTTTGCTCCAACCACCTTGTCCACAATCTTCCCCTCTTTCAGGAACA
TGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACTCTTCAGT
TCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCTTGGCCAG
CTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCATGAAGCAG
TGAAATCAACAACAACCCC
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