CB304764

Overview
NameCB304764
Unique NameCB304764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:282..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 416
            V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   55 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 416
            V+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   19 VLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 416
            V+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   19 VLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 31/86 (36.05%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  165 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 416
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 416
            V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   22 VLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            VV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   90 VVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  168 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 416
            V+VDF A WCGPCR +AP + E++++    V  +K++ DE  + A+ + + ++PT M  K G+ VD VVGA  K  L  T+ K+L
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  165 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 416
            V+VDF A WCGPCR ++P +  +A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of CB304764 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  174 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 416
            V VDF+A WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  V  +PTF F K  + V +  GA  E+L+++IA+
Sbjct:  468 VAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
The following BLAST results are available for this feature:
BLAST of CB304764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
TRXM_CHLRE3.944e-1241.18Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIO_LISMO3.944e-1238.82Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN3.944e-1238.82Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_PORYE5.151e-1236.05Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_GRIPA5.151e-1244.71Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXF_SPIOL6.727e-1241.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF1_ARATH8.786e-1238.64Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
THIO_SYNY38.786e-1241.18Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORPU8.786e-1234.88Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
TXND2_RAT1.147e-1140.74Thioredoxin domain-containing protein 2 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304764 ID=CB304764; Name=CB304764; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAACACACAAACAAACA
CAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGCATATATT
GAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTATAACTTAT
TAGGCAGAAGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCAGTTCCTC
TTTCTTTGCTCCAACCACCTTGTCCACAATCTTCCCCTCTTTCAGGAACA
TGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACTCTTCAGT
TCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCTTGGCCAG
CTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCATGAAGCAG
TGAAATCAACAACAACCCC
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