CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = -2
Query:  302 GYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 658
            GYK C+FHR+IKDFMIQ            +SIYGS F DE+F LKH+GPG+LSMANAG +TNG QFFI   KT +LDN+HVVFG V+DGM  VRK+E+V T   + PK+P  ++  G+L
Sbjct:   65 GYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.450e-34
Identity = 72/122 (59.02%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KGYGYKG  FHR+IKDFMIQ           G+SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  WLD +HVVFG VIDGM VV  +E   T   D P   C IINSG++
Sbjct:   78 KGYGYKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 199          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.100e-33
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KGYGYKG  FHR+IKDFMIQ           GISIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  WLD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++
Sbjct:   78 KGYGYKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVNSGKI 199          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.100e-33
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = -2
Query:  290 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 667
            KG+GY+G +FHR+IKDFMIQ           G SIYG+ F+DE+F L+H   G+LSMANAG +TNGSQFFI T  TPWLD +HVVFG V++G D+V K+++V   R D P    +I+ SGEL ++A
Sbjct:   74 KGFGYEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIVKSGELEMEA 199          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  293 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 655
            YKG +FHR+IK FMIQ           G SIYG  F DE+F LKHVG G LSMANAGPNTNG+QFFI T + PWLD +HVVFG V++GM VVR++E+++T   D P    +I N G +P+D
Sbjct:   81 YKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHIPVD 201          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 667
            KG+GYK   FHR+IKDFMIQ           G SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GMDVVRK+E+ +T   D P     I++ G++ ++
Sbjct:   84 KGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKIEVE 208          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.437e-33
Identity = 71/122 (58.20%), Postives = 85/122 (69.67%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GYKGCSFHR+I +FM+Q           G SIYG+ F DE+F LKH GPG LSMANAGPNTNGSQFFI T+K  WLD +HVVFG V +GMDVV+ +ES+  S    P+    I N G+L
Sbjct:   44 KGFGYKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESL-GSPNGTPRAKIIIDNCGQL 164          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 1.877e-33
Identity = 71/125 (56.80%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 667
            KG+GYK   FHR+IKDFMIQ           G SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I + G++ ++
Sbjct:   84 KGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTIADCGKIEVE 208          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.877e-33
Identity = 68/102 (66.67%), Postives = 78/102 (76.47%), Query Frame = -2
Query:  362 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 667
            KG+GYKG  FHR+I +FM Q           G SIYG+ FEDE+F LKH GPG+L MANAGPNTNGSQFFI T KT WLDNRHVVFG V++GMDVV+KLES+
Sbjct:   44 KGFGYKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESL 145          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.451e-33
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 667
            KG+G+KG  FHR+IKDFMIQ           G SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GMDVVRK+E+ +T   D P     I + G + ++
Sbjct:   75 KGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVE 199          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CYP11_CAEEL2.895e-3457.14Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIC_HUMAN6.450e-3459.02Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPIC_BOVIN1.100e-3358.20Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIB_EMENI1.100e-3353.97Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIB_SCHJA1.437e-3356.20Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_RAT1.437e-3356.00Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIA1_RHIOR1.437e-3358.20Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPIB_BOVIN1.877e-3356.80Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIA_BLAGE1.877e-3366.67Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIB_CHICK2.451e-3356.00Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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