CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus fumigatus GN=cyp1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y    FHRII +FM+Q             SIYG  FEDE    LKH G GVLSMAN+GPNTNGSQFFI    TPWLD +H +FG V  GM V++++  V+T+  D P    +II +
Sbjct:   36 RGY-YNNVIFHRIIPNFMVQTGDPTGTGRGGS-SIYGEKFEDEIHPGLKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRVKSGMRVIQRMGLVKTNSEDRPVDEVKIIRA 153          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.690e-23
Identity = 58/127 (45.67%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  305 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK-----VPCRIINSGE 667
            +GY Y    FHRII +FM+Q             SIYG  FEDE    LKH G G+LSMAN+GPNTNGSQFF+    TPWLD +H +FG V  GM V++++  V+T+  D P      +  R++  GE
Sbjct:   36 RGY-YNNVIFHRIIPNFMVQTGDPTGTGRGGS-SIYGEKFEDEIRADLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMRVIQRMGLVKTNGEDRPVDEVKIIRARVVEEGE 160          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 63/119 (52.94%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  314 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETS-RTDYPKVPCRIIN 664
            GY Y G +FHRIIK FMIQ             SI+G  FEDE    L+H  P  LSMANAG NTNGSQFFI  V TPWLDN+H VFG V  GM+VV+++ +V+ + +TD P     IIN
Sbjct:  526 GY-YNGHTFHRIIKGFMIQTGDPTGTGMGGE-SIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYEDVSIIN 642          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y G  FHRIIKDFMIQ             SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+ +V ++  VET+  D P    +II +
Sbjct:   45 RGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_EMENI (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emericella nidulans GN=cyp1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y    FHRII +FM+Q             SIYG  FEDE    LKH G G+LSMAN+GPNTNGSQFFI    TPWLD +H +FG V  GM +++++  V+T+  D P    +I+ +
Sbjct:   36 RGY-YNNVIFHRIIPNFMVQTGDPTGTGRGGS-SIYGEKFEDEIRSDLKHTGAGILSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRVKSGMRIIQRMGLVKTNNEDRPLDEVKILRA 153          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y G  FHRIIKDFMIQ             SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+ +V ++  VET+  D P    +II +
Sbjct:   45 RGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL1_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y G  FHRIIKDFMIQ             SIYG  FEDE    LK  G G+L+MANAGP+TNGSQFF+    T WLD +H +FG V  G+ +V ++  VET+  D P    +I+ +
Sbjct:   45 RGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKILKA 162          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 60/118 (50.85%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  314 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 664
            GY Y    FHR+IK FMIQ             SI+G  FEDE S   +H  P  +SMANAGPNTNGSQFFI    T WLDN+H VFG V  GMDVV  +ES +  +T+ P    +IIN
Sbjct:  511 GY-YDNLIFHRVIKGFMIQTGCPFGDGTGGE-SIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIESAKVDKTNKPLDDIKIIN 626          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 60/120 (50.00%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  311 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 667
            +GY Y    FHR+IKDFMIQ             SIYG  FEDE +  LKH G G+LSMAN+G N+NGSQFFI    TPWLD +H +FG V  GM VV+K+ +++T+  D P    RII +
Sbjct:   37 RGY-YDNTIFHRLIKDFMIQGGDPLGNGRGGE-SIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGMKVVQKMNAMQTN-NDKPIDEIRIIKA 153          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 60/118 (50.85%), Postives = 71/118 (60.17%), Query Frame = -2
Query:  314 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 664
            GY Y    FHRIIK+FMIQ             SI+   FEDE S  LKH  P  +SMAN+GPNTNGSQFFI T  TPWLD +H +F     G+DVV ++E  ET + D P  P +IIN
Sbjct:  489 GY-YDNTIFHRIIKNFMIQGGDPLGDGTGGE-SIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQGETDKYDRPLEPTKIIN 604          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIL1_ASPFU3.922e-2349.17Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPIL1_ASPOR6.690e-2345.67Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPWD1_MOUSE1.141e-2252.94Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL1_HUMAN1.141e-2248.33Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]
PPIL1_EMENI1.141e-2246.67Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emer... [more]
PPIL1_BOVIN1.141e-2248.33Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos ... [more]
PPIL1_MOUSE1.947e-2247.50Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus ... [more]
CYP15_RHIOR2.542e-2250.85Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
CYPE_DICDI3.320e-2250.00Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
CYP9_SCHPO3.320e-2250.85Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
back to top