CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.201e-33
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KGYGYKG  FHR+IKDFMIQ           G+SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI   K  WLD +HVVFG V+DGM VV  +E   T   D P   C I+NSG++
Sbjct:   78 KGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 199          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.201e-33
Identity = 73/125 (58.40%), Postives = 82/125 (65.60%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 667
            KG GY G  FHR+I DFMIQ           G SIYG  F DE+F LKH G G LSMANAG +TNGSQFFI TVKTPWLD RHVVFG +++GMDVVRK+E  E    D PK    I  SG + +D
Sbjct:   69 KGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 193          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.181e-33
Identity = 69/122 (56.56%), Postives = 83/122 (68.03%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GY+G  FHR+I +FMIQ           G SIYGS F DE+F L H  PG+LSMANAGP++NGSQFFI TVKTPWLD  HVVFG V+ G D+V+K+   ET   D P    +II SG+L
Sbjct:   67 KGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQL 188          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.181e-33
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GY+G +FHR+IKDFMIQ           G SIYG  F DE+F L+H   G+LSMANAG +TNGSQFFI TV TPWLD RHVVFG V++G ++V ++E+V   R+D P    +I+ SGEL
Sbjct:   75 KGFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKSGEL 196          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.460e-33
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 667
            KG+GYK   FHR+IKDFMIQ           G SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GM+VVRK+ES +T   D P     I + G++ ++
Sbjct:   84 KGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 208          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GYKG  FHR+I +FM Q           G SIYG+ F DE+F LKH G G+LSMANAG NTNGSQFFICTVKT WLDN+HVVFG V++G+DVV+K+ES   S++        + NSG L
Sbjct:  107 KGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESY-GSQSGKTSKKIIVANSGSL 227          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 70/122 (57.38%), Postives = 83/122 (68.03%), Query Frame = -2
Query:  299 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 664
            GYGYKG +FHR+IK FMIQ           G SIYG+ F DE+F L+H  PG+LSMANAG +TNGSQFFI TV TPWLD +HVVFG V++GMDVV K+E+  T     P V   I + G LP
Sbjct:   75 GYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCGLLP 196          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            +GYGYKGCSFHR+I +FM Q           G SIYG  F DE+F LKH   G LSMAN+G NTNGSQFFICT KT WLDN+HVVFGHVI G +VVRK+E    S++  P     I + GEL
Sbjct:  179 QGYGYKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERC-GSKSGTPSQKIVIYSCGEL 299          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  293 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 655
            YKG +FHR+IK FMIQ           G SIYG  F DE+F L+HVG G LSMANAGP+TNGSQFFI TVKT WLD +HVVFG V++GM++VR++ES  T   D P    +I + G +P++
Sbjct:   81 YKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHIPVE 201          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 69/122 (56.56%), Postives = 83/122 (68.03%), Query Frame = -2
Query:  302 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 667
            KG+GY+G +FHR+IK FMIQ           G SIYG  F DE+F LKH   G+LSMANAG +TNGSQFFI TV T WLD +HVVFG V++G DVV K+E+ +T   D P  P +I  SGEL
Sbjct:   75 KGFGYEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPAEPIKIAKSGEL 196          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIC_MOUSE3.201e-3357.38Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
CYP5_CAEEL3.201e-3358.40Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIB_SCHPO4.181e-3356.56Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_ASPNG4.181e-3355.74Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_HUMAN5.460e-3356.00Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIA_DROME1.589e-3257.38Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIB1_RHIOR2.075e-3257.38Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
PPIE_DROME3.539e-3258.20Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPIB_SCHMA3.539e-3255.37Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_NEUCR3.539e-3256.56Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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