CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 46/111 (41.44%), Postives = 55/111 (49.55%), Query Frame = -2
Query:  329 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETSRTDYPKVP 655
            Y G  FHR+I+ FMIQ               +   F  E   L+   P +L+MANAGP TNGSQFFI   KTP L+ RH +FG VID     VV  +    T   D P  P
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDP 173          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  338 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD-VVRKLESVETSRTDYP 667
            KGY Y+  +FHR I++FMIQ             SI+G +FEDE      H   G++SMAN G NTN SQFFI       LD +H +F  VI+G D  +  +E+V T  +D P
Sbjct:  363 KGY-YRDVAFHRSIRNFMIQGGDPSGTGRGGS-SIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRP 472          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL2_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryptococcus neoformans GN=CYP8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = -2
Query:  362 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE---SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 655
            Y    FHR+I  FM+Q             S +G  F DE       KH   GVLSMAN+GP TNGSQFF     TP LD +H VFG ++ G + + K+E V
Sbjct:  350 YDNVVFHRLIPGFMVQGGDPTGTGRGGE-SYWGEPFRDEHGEKGAYKHDSRGVLSMANSGPRTNGSQFFFTFRPTPHLDGKHTVFGKLVGGEETLDKIERV 449          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYP7_YEAST (Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccharomyces cerevisiae GN=CPR7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 51/139 (36.69%), Postives = 63/139 (45.32%), Query Frame = -2
Query:  308 YKGCSFHRIIKDFMIQXXXXXXXXXXXG---------ISIYGSSFE----DESFVL---------KHVGPGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 655
            YKG  FHR++K+FMIQ                      SIY    E    DESF           + V P  L MAN G PNTN SQFFI T   P L+ +H +FG V+ G  VVR +E+        P+   RI + G
Sbjct:   57 YKGNGFHRVVKNFMIQAGDIVFGTQKDSSSSSVGKGGCSIYADKEEVKTDDESFCYGNFEDENLGEFVEPFTLGMANLGSPNTNNSQFFITTYAAPHLNGKHSIFGQVVHGKSVVRTIENCRVDSDGVPESDVRISDCG 195          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIA_MYCLE (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium leprae GN=ppiA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  344 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD 655
            Y G  FHR+I+ FMIQ               +   F  E   L+   P +L+MANAGP TNGSQFFI   +TP L+ RH +FG V D  D  + ++++ T+ TD
Sbjct:   66 YDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGETPHLNRRHTIFGEVTD-PDSQKVVDAISTTATD 165          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  338 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP 655
            Y    FHR IK FMIQ             SI+   F+DE    LKH   G+LSMAN+GP+TNGSQFFI   K   L+  + VFG +I G++V+  +E V     D P
Sbjct:   37 YNNTIFHRNIKGFMIQGGDPTNTGRGGE-SIWKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKVPVDDKDLP 142          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_STRCH (Peptidyl-prolyl cis-trans isomerase B OS=Streptomyces chrysomallus GN=cypB PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 43/109 (39.45%), Postives = 53/109 (48.62%), Query Frame = -2
Query:  338 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID--GMDVVRKLESVETS-RTDYP 655
            Y G  FHR+I  FMIQ               +   F  E   L    P +L+MANAGP TNGSQFF+    T WL  +H +FG V    G  VV  + +  T+ RTD P
Sbjct:   56 YDGTVFHRVISGFMIQGGDPLGNGTGGPGYKFADEFHPE---LGFTQPYLLAMANAGPGTNGSQFFLTVSPTAWLTGKHTIFGEVSGEAGRKVVDAIAATPTNPRTDRP 161          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL3_USTMA (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ustilago maydis GN=CYP10 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = -2
Query:  329 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP 655
            Y    +HR IK FMIQ             SI+G  F DE    LK    G+++ ANAGP+TN SQFFI   K P LD ++ + G VIDG +    L+++E    D    P
Sbjct:   37 YNDVKWHRNIKSFMIQTGDPTGTGKGGQ-SIWGKPFADEIRSSLKFDRRGIVACANAGPDTNKSQFFITYAKQPHLDGKYTIIGKVIDGAEDGGTLDAMEAIPVDAKNRP 145          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIL2_USTMA (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Ustilago maydis GN=CYP8 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 47/112 (41.96%), Postives = 57/112 (50.89%), Query Frame = -2
Query:  338 YKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDE---SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMD--VVRKLESVETSR-TDYP 655
            Y    FHR I  FMIQ             SI+ S+F DE       KH   GVLSMAN G +TN SQFFI     P LD +H VFG ++DG     + K+E V + + TD P
Sbjct:  329 YDDTLFHRNIPGFMIQGGDPTGTGRGGS-SIWNSNFRDEFNEPGAFKHDTRGVLSMANKGKDTNASQFFITYRGVPHLDGKHTVFGRLVDGDKDATLTKMEQVPSEQGTDRP 439          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
PPIA_MYCBO2.157e-1341.44Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL2_NEUCR2.817e-1341.96Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
PPIL2_CRYNE2.817e-1342.57Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryp... [more]
CYP7_YEAST1.071e-1236.69Peptidyl-prolyl cis-trans isomerase CYP7 OS=Saccha... [more]
PPIA_MYCLE1.826e-1240.38Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIL3_DICDI2.385e-1242.99Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPIB_STRCH4.498e-1139.45Peptidyl-prolyl cis-trans isomerase B OS=Streptomy... [more]
PPIL3_USTMA5.874e-1139.09Peptidyl-prolyl cis-trans isomerase-like 3 OS=Usti... [more]
PPIL2_USTMA7.672e-1141.96Peptidyl-prolyl cis-trans isomerase-like 2 OS=Usti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
back to top